Fine-mapping of a major QTL (Fwr1) for fusarium wilt resistance in radish

• DOI: 10.1007/s00122-019-03461-7
• Publication Date: 2019-11-04T19:03:03Z
• Authors: Xiaona Yu; Lu Lu; Yinbo Ma; Sushil Satish Chh...; So Young Yi; Yong Pyo Lim; Su Ryun Choi
• Keywords: Genetic Markers; 0301 basic medicine; Quantitative Trait Loci; Molecular Sequence Annotation; Physical Chromosome Mapping; Polymorphism, Single Nucleotide; Raphanus; 03 medical and health sciences; Fusarium; INDEL Mutation; Gene Expression Regulation, Plant; Genetic Association Studies; Genome, Plant; Disease Resistance; Plant Diseases; Signal Transduction

A major radish QTL (Fwr1) for fusarium wilt resistance was fine-mapped. Sequence and expression analyses suggest that a gene encoding a serine/arginine-rich protein kinase is a candidate gene for Fwr1. Fusarium wilt resistance locus 1 (Fwr1) is a major quantitative trait locus (QTL) mediating the resistance of radish inbred line 'B2' to Fusarium oxysporum, which is responsible for fusarium wilt. We previously detected Fwr1 on radish linkage group 3 (i.e., chromosome 5). In this study, a high-resolution genetic map of the Fwr1 locus was constructed by analyzing 354 recombinant F2 plants derived from a cross between 'B2' and '835', the latter of which is susceptible to fusarium wilt. The Fwr1 QTL was fine-mapped to a 139.8-kb region between markers FM82 and FM87 in the middle part of chromosome 5. Fifteen candidate genes were predicted in this region based on a sequence comparison with the 'WK10039' radish reference genome. Additionally, we examined the time-course expression patterns of these predicted genes following an infection by the fusarium wilt pathogen. The ORF4 expression level was significantly higher in the resistant 'B2' plants than in the susceptible '835' plants. The ORF4 sequence was predicted to encode a serine/arginine-rich protein kinase and includes SNPs that result in nonsynonymous mutations, which may have important functional consequences. This study reveals a novel gene responsible for fusarium wilt resistance in radish. Further analyses of this gene may elucidate the molecular mechanisms underlying the fusarium wilt resistance of plants.