An ontology-centric architecture for extensible scientific data management systems

• DOI: 10.1016/j.future.2011.06.007
• Publication Date: 2011-07-10T17:11:14Z
• Authors: Yuan-Fang Li; Gavin Kennedy; Faith Ngoran; Philip Wu; Jane Hunter
• Keywords: Ontology-centric; Bioinformatics; Ontology; 006; 02 engineering and technology; Ontology-centric architecture; Semantics; Information management Bioinformatics; Architecture; 0202 electrical engineering, electronic engineering, information engineering; Keywords: Data management system; Phenomics; Data management systems; OWL; PODD

Data management has become a critical challenge faced by a wide array of scientific disciplines in which the provision of sound data management is pivotal to the achievements and impact of research projects. Massive and rapidly expanding amounts of data combined with data models that evolve over time contribute to making data management an increasingly challenging task that warrants a new approach. In this paper we present an ontology-centric architecture for data management systems that is extensible and domain independent. In this architecture, the behaviors of domain concepts and objects are captured entirely by ontological entities, around which all data management tasks are carried out. The open and semantic nature of ontology languages also makes this architecture amenable to greater data reuse and interoperability. To evaluate the proposed architecture, we have applied it to the challenge of managing phenomics data. Highlights? A novel, extensible ontology-centric architecture for scientific data management. ? We present the formal definitions of ontology versioning and dynamic composition. ? We demonstrate the feasibility of the architecture through an implemented system.