Dominant negative effects of SCN5A missense variants

• DOI: 10.1016/j.gim.2022.02.010
• Publication Date: 2022-03-16T21:23:50Z
• Authors: Matthew J. O’Neill; Ayesha Muhammad; Bian Li; Yuko Wada; Lynn Hall; Joseph F. Solus; Laura Short; Dan M. Roden; Andrew M. Glazer
• Keywords: Haploinsufficiency; HEK 293 cells

AbstractIntroductionUp to 30% of patients with Brugada Syndrome (BrS) carry loss-of-function (LoF) variants in the cardiac sodium channel geneSCN5A. Recent studies have suggested that theSCN5Aprotein product NaV1.5 can form dimers and exert dominant negative effects.MethodsWe identified 35 LoF variants (<10% peak current compared to wild type (WT)) and 15 partial LoF variants (10-50% peak current compared to WT) that we assessed for dominant negative behavior.SCN5Avariants were studied in HEK293T cells alone or in heterozygous co-expression with WTSCN5Ausing automated patch clamp. To assess clinical risk, we compared the prevalence of dominant negative vs. putative haploinsufficient (frameshift/splice site) variants in a BrS case consortium and the gnomAD population database.ResultsIn heterozygous expression with WT, 32/35 LoF variants and 6/15 partial LoF showed reduction to <75% of WT-alone peak INa, demonstrating a dominant negative effect. Carriers of dominant negative LoF missense variants had an enriched disease burden compared to putative haploinsufficient variant carriers (2.7-fold enrichment in BrS cases, p=0.019).ConclusionsMostSCN5Amissense LoF variants exert a dominant negative effect. Cohort analyses reveal that this class of variant confers an especially high burden of BrS.