OPT gene family analysis of potato (Solanum tuberosum) responding to heavy metal stress: Comparative omics and co-expression networks revealed the underlying core templates and specific response patterns

• DOI: 10.1016/j.ijbiomac.2021.07.183
• Publication Date: 2021-08-02T15:03:08Z
• Authors: Danxia Wu; Guandi He; Weijun Tian; Muhammad Saleem; Dandan Li; Yun Huang; Lulu Meng; Yeqing He; Yao Liu; Tengbing He
• Keywords: 0301 basic medicine; 2. Zero hunger; Gene Expression Profiling; Genes, Plant; Synteny; Chromosomes, Plant; 03 medical and health sciences; Gene Expression Regulation, Plant; Stress, Physiological; Gene Duplication; Metals, Heavy; Multigene Family; Gene Regulatory Networks; Nucleotide Motifs; Promoter Regions, Genetic; Conserved Sequence; Phylogeny; Solanum tuberosum

Oligopeptides transporter (OPT) can maintain intracellular metal homeostat, however, their evolutionary characteristics, as well as their expression patterns in heavy metal exposure, remain unclear. Compared with previous OPT family identification, we identified 94 OPT genes (including 21 in potato) in potato and 4 other plants by HMMER program based on OPT domain (PF03169) for the first time. Secondly, conserved and special OPTs were found through comprehensive analysis. Thirdly, spatio-temporal tissue specific expression patterns and co-expression frameworks of potato OPT genes under different heavy metal stress were constructed. These data can provide excellent gene resources for food security and soil remediation.