YADA: a tool for taking the most out of high-resolution spectra

• DOI: 10.1093/bioinformatics/btp489
• Publication Date: 2009-08-15T00:39:07Z
• Authors: Paulo C. Carvalho; Tao Xu; Xuemei Han; Daniel Cociorva; Valmir C. Barbosa; John R. Yates
• Keywords: Monoisotopic mass

Abstract Summary: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to corresponding tandem spectrum, account for different co-fragmenting ion species (multiplexed spectra). We describe how enables a pipeline consisting of ProLuCID DTASelect analyzing large-scale middle-down proteomics data. Availability: http://fields.scripps.edu/yada Contact: [e-mail] Supplementary information: data are available at Bioinformatics online.