Crystal structure of heme oxygenase‐1 from cyanobacterium Synechocystis sp. PCC 6803 in complex with heme

• DOI: 10.1111/j.1432-1033.2004.04411.x
• Publication Date: 2004-11-19T10:07:38Z
• Authors: Masakazu Sugishima; Catharina T. Migita; Xuhong Zhang; Tadashi Yoshida; Keiichi Fukuyama
• Keywords: Models, Molecular; 0301 basic medicine; Binding Sites; Molecular Sequence Data; Static Electricity; Synechocystis; Membrane Proteins; Heme; Crystallography, X-Ray; Protein Structure, Secondary; Rats; 03 medical and health sciences; Heme Oxygenase (Decyclizing); Animals; Ferredoxins; Humans; Amino Acid Sequence; Amino Acids; Hydrophobic and Hydrophilic Interactions; Heme Oxygenase-1; NADPH-Ferrihemoprotein Reductase

Heme oxygenase (HO) catalyzes the oxidative degradation of heme utilizing molecular oxygen and reducing equivalents. In photosynthetic organisms, HO functions in the biosynthesis of such open‐chain tetrapyrroles as phyto‐chromobilin and phycobilins, which are involved in the signal transduction for light responses and light harvesting for photosynthesis, respectively. We have determined the first crystal structure of a HO‐1 from a photosynthetic organism, Synechocystis sp. PCC 6803 (Syn HO‐1), in complex with heme at 2.5 Å resolution. Heme–Syn HO‐1 shares a common folding with other heme–HOs. Although the heme pocket of heme–Syn HO‐1 is, for the most part, similar to that of mammalian HO‐1, they differ in such features as the flexibility of the distal helix and hydrophobicity. In addition, 2‐propanol derived from the crystallization solution occupied the hydrophobic cavity, which is proposed to be a CO trapping site in rat HO‐1 that suppresses product inhibition. Although Syn HO‐1 and mammalian HO‐1 are similar in overall structure and amino acid sequence (57% similarity vs. human HO‐1), their molecular surfaces differ in charge distribution. The surfaces of the heme binding sides are both positively charged, but this patch of Syn HO‐1 is narrow compared to that of mammalian HO‐1. This feature is suited to the selective binding of ferredoxin, the physiological redox partner of Syn HO‐1; the molecular size of ferredoxin is ≈ 10 kDa whereas the size of NADPH‐cytochrome P450 reductase, a reducing partner of mammalian HO‐1, is ≈ 77 kDa. A docking model of heme–Syn HO‐1 and ferredoxin suggests indirect electron transfer from an iron–sulfur cluster in ferredoxin to the heme iron of heme–Syn HO‐1.