A5047530905- Plant Molecular Biology Research
- Photosynthetic Processes and Mechanisms
- Plant Stress Responses and Tolerance
- Plant Gene Expression Analysis
- Plant-Microbe Interactions and Immunity
- Plant Disease Resistance and Genetics
- Plant nutrient uptake and metabolism
- Plant biochemistry and biosynthesis
- Plant Reproductive Biology
- Plant Virus Research Studies
- Plant tissue culture and regeneration
- Genomics and Phylogenetic Studies
- Light effects on plants
- Genomics, phytochemicals, and oxidative stress
- Garlic and Onion Studies
- Plant Micronutrient Interactions and Effects
- Plant Pathogens and Resistance
- Microbial Metabolism and Applications
- Enzyme-mediated dye degradation
- Lipid metabolism and biosynthesis
- Plant pathogens and resistance mechanisms
- Genetic Mapping and Diversity in Plants and Animals
- Agriculture, Soil, Plant Science
- Plant responses to water stress
- Plant Genetic and Mutation Studies
Nanjing Agricultural University
2016-2025
Ministry of Agriculture and Rural Affairs
2019-2025
Hebei North University
2025
Shandong Provincial Hospital
2025
Shandong First Medical University
2025
South China Agricultural University
2025
Southwest Medical University
2025
Beike Biotechnology (China)
2024
Xi'an Technological University
2024
BGI Group (China)
2024
Linkage maps enable the study of important biological questions. The construction high-density linkage appears more feasible since advent next-generation sequencing (NGS), which eases SNP discovery and high-throughput genotyping large population. However, marker number explosion errors from NGS data challenge computational efficiency map quality methods. Here we report HighMap method for constructing data. employs an iterative ordering error correction strategy based on a k-nearest neighbor...
Abstract Carotenoids play indispensable roles in the ripening process of fleshy fruits. Capsanthin is a widely distributed and utilized natural red carotenoid. However, regulatory genes involved capsanthin biosynthesis remain insufficient. Here, we identified MADS-box transcription factor RIPENING INHIBITOR (MADS-RIN) pepper (Capsicum annuum), which regulates climacteric tomato (Solanum lycopersicum) fruits, using weighted gene co-expression network analysis (WGCNA). We found MADS-RIN can...
Abstract Background Chinese cabbage ( Brassica rapa ssp. pekinensis ) is a member of one the most important leaf vegetables grown worldwide, which has experienced thousands years in cultivation and artificial selection. The entire genome sequence, more than forty thousand proteins have been obtained to date. undergone triplication events since its divergence from Arabidopsis thaliana (13 17 Mya), however high degree sequence similarity conserved structure remain between two species....
Abstract Autophagy emerges as an essential immunity defense against intracellular pathogens. Here we report that turnip mosaic virus (TuMV) infection activates autophagy in plants and Beclin1 (ATG6), a core component of autophagy, inhibits replication. interacts with NIb, the RNA-dependent RNA polymerase (RdRp) TuMV, via highly conserved GDD motif interaction complex is targeted for autophagic degradation likely through adaptor protein ATG8a. Beclin1-mediated NIb inhibited by inhibitors....
Carrot (Daucus carota L.) is an economically important vegetable worldwide and the largest source of carotenoids provitamin A in human diet. Given importance this to humans, research breeding communities on carrot should obtain useful genomic transcriptomic information. The first whole-genome sequences 'DC-27' were de novo assembled analyzed. Transcriptomic 14 genotypes downloaded from Sequence Read Archive (SRA) database National Center for Biotechnology Information (NCBI) mapped sequence...
Epigenetic modifications are implicated in plant adaptations to abiotic stresses. Exposure of plants one stress can induce resistance other stresses, a process termed cross-adaptation, which is not well understood. In this study, we aimed unravel the epigenetic basis elevated heat-tolerance cold-acclimated Brassica rapa by conducting genome-wide DNA methylation analysis leaves from control (CK) and (CA) plants. We found that both demethylation occurred during cold acclimation. Two...
Abstract Celery ( Apium graveolens L.) is a vegetable crop in the Apiaceae family that widely cultivated and consumed because it contains necessary nutrients multiple biologically active ingredients, such as apigenin terpenoids. Here, we report genome sequence of celery based on use HiSeq 2000 sequencing technology to obtain 600.8 Gb data, achieving ~189-fold coverage, from 68 libraries with different insert sizes ranging 180 bp 10 kb length. The assembled has total length 2.21 consists...
Abstract Non-heading Chinese cabbage (NHCC) is an important leafy vegetable cultivated worldwide. Here, we report the first high-quality, chromosome-level genome of NHCC001 based on PacBio, Hi-C, and Illumina sequencing data. The assembled 405.33 Mb in size with a contig N50 2.83 scaffold 38.13 Mb. Approximately 53% composed repetitive sequences, among which long terminal repeats (LTRs, 20.42% genome) are most abundant. Using Hi-C data, 97.9% (396.83 Mb) sequences were assigned to 10...
Flavonols have been shown to respond a variety of abiotic stresses in plants, including cold stress. Higher total flavonoid content was found non-heading Chinese cabbage (NHCC, Brassica campestris (syn. rapa) ssp. chinensis) after A non-targeted metabolome analysis showed significant increase flavonol content, that quercetin and kaempferol. Here, we an R2R3-MYB transcription factor, BcMYB111, may play role this process. BcMYB111 up-regulated response treatment, with accompanying accumulation...
Vegetables are plants or portion of cultivated for food with a savory flavor and considerably nutritional value little protein fat. The yield quality vegetable crops affected by various abiotic stresses, such as drought, salinity low high temperatures. Higher have evolved series complex responses in order to adapt single multiple stresses. Recently, high-throughput sequencing has brought powerful efficient research tools that can lead better understanding the molecular mechanisms behind...
Non-heading Chinese cabbage (NHCC, Brassica rapa ssp. chinensis) is an important leaf vegetable grown worldwide. However, little known about the molecular mechanisms underlying tolerance for extreme temperature in NHCC. The limited availability of NHCC genomic information has greatly hindered functional analysis and breeding.
Although exogenous applications of gibberellins (GAs) delay tomato ripening, the regulatory mechanisms GAs in process have never been well recognized. Here, we report that concentration endogenous is declined before increase ethylene production mature-green to breaker stage fruits. We further demonstrate reductions GA levels via overexpression a catabolism gene SlGA2ox1 specifically fruit tissues lead early ripening. Consistently, also observed application biosynthetic inhibitor,...
Cytosine DNA methylation is a critical epigenetic mechanism in the silencing of transposable elements, imprinting and regulating gene expression. However, little known about potential role mC response to heat stress. To determine explore functions dynamic methylome during stress, we characterized single-base resolution maps Brassica rapa assessed changes under stress using whole genome bisulfite sequencing. On average, levels CG, CHG CHH are 39.3%, 15.38% 5.24% non-heading Chinese cabbage...
Summary Autophagy is an evolutionarily conserved pathway in eukaryotes that delivers unwanted cytoplasmic materials to the lysosome/vacuole for degradation/recycling. Stimulated autophagy emerges as integral part of plant immunity against intracellular pathogens. In this study, we used turnip mosaic virus (TuMV) a model investigate involvement RNA infection. The small membrane protein 6K2 TuMV, known marker replication site and elicitor unfolded response (UPR), upregulates selective receptor...
Plants have evolved various strategies to sense and respond saline environments, which severely reduce plant growth limit agricultural productivity. Alteration the cell wall is one strategy that helps plants adapt salt stress. However, physiological mechanism of how components stress not fully understood. Here, we show expression XTH30, encoding xyloglucan endotransglucosylase-hydrolase30, strongly up-regulated in response Arabidopsis. Loss-of-function XTH30 leads increased tolerance...
Elongated hypocotyl5 (HY5) is a key transcription factor that promotes photomorphogenesis. Constitutive photomorphogenic1 (COP1)-Suppressor of phytochrome A-105 (SPA) E3 ubiquitin ligase complex ubiquitination and degradation HY5 to repress photomorphogenesis in darkness. also regulated by phosphorylation at serine 36 residue. However, the kinase responsible for remains unknown. Here, using extensive vitro vivo biochemical, genetic, photobiological techniques, we have identified new...