Yurae Shin

ORCID: 0000-0003-1352-1190
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Research Areas
  • Single-cell and spatial transcriptomics
  • Epigenetics and DNA Methylation
  • Genomics and Chromatin Dynamics
  • Bacterial Genetics and Biotechnology
  • RNA Research and Splicing
  • Genetics and Neurodevelopmental Disorders
  • Neurogenesis and neuroplasticity mechanisms
  • Neuroscience and Neuropharmacology Research
  • Microbial Metabolic Engineering and Bioproduction
  • RNA and protein synthesis mechanisms
  • Neurobiology and Insect Physiology Research
  • Pluripotent Stem Cells Research
  • Bioinformatics and Genomic Networks

Yale University
2011-2018

National Research Foundation of Korea
2018

Mingfeng Li Gabriel Santpere Yuka Imamura Kawasawa Oleg V. Evgrafov Forrest O. Gulden and 95 more Sirisha Pochareddy Susan M. Sunkin Zhen Li Yurae Shin Ying Zhu André M. M. Sousa Donna M. Werling Robert R. Kitchen Hyo Jung Kang Mihovil Pletikos Jinmyung Choi Sydney K. Muchnik Xuming Xu Daifeng Wang Belén Lorente-Galdós Shuang Liu Paola Giusti‐Rodríguez Hyejung Won Christiaan de Leeuw Antonio F. Pardiñas Ming Hu Fulai Jin Yun Li Michael J. Owen Michael O’Donovan James Walters Daniëlle Posthuma Mark A. Reimers Pat Levitt Daniel R. Weinberger Thomas M. Hyde Joel E. Kleinman Daniel H. Geschwind Michael Hawrylycz Matthew W. State Stephan Sanders Patrick F. Sullivan Mark Gerstein Ed S. Lein James A. Knowles Nenad Šestan A. Jeremy Willsey Aaron Oldre Aaron Szafer Adrian Camarena Adriana Cherskov Alexander W. Charney Alexej Abyzov Alexey Kozlenkov Alexias Safi Allan R. Jones Allison E. Ashley‐Koch Amanda Ebbert Amanda J. Price Amanda Sekijima Amira Kefi Amy Bernard Anahita Amiri Andrea Sboner Andrew E. Clark Andrew E. Jaffe Andrew T.N. Tebbenkamp Andy J. Sodt Angie Guillozet‐Bongaarts Angus C. Nairn Anita Carey Anita Hüttner Ann Chervenak Anna Szekely Annie W. Shieh Arif Harmanci Barbara K. Lipska Becky C. Carlyle Ben W. Gregor Bibi Kassim Brooke Sheppard Candace Bichsel Chang-Gyu Hahn Chang-Kyu Lee Chao Chen Chihchau L. Kuan Chinh Dang Chris Lau Christine Cuhaciyan Christoper Armoskus Christopher E. Mason Chunyu Liu Cliff Slaughterbeck Crissa Bennet Dalila Pinto Damon Polioudakis Daniel Franjic Daniel J. Miller Darren Bertagnolli David A. Lewis

INTRODUCTION The brain is responsible for cognition, behavior, and much of what makes us uniquely human. development the a highly complex process, this process reliant on precise regulation molecular cellular events grounded in spatiotemporal transcriptome. Disruption can lead to neuropsychiatric disorders. RATIONALE regulatory, epigenomic, transcriptomic features human have not been comprehensively compiled across time, regions, or cell types. Understanding etiology disorders requires...

10.1126/science.aat7615 article EN Science 2018-12-14
Anahita Amiri Gianfilippo Coppola Soraya Scuderi Feinan Wu Tanmoy Roychowdhury and 95 more Fuchen Liu Sirisha Pochareddy Yurae Shin Alexias Safi Lingyun Song Ying Zhu André M. M. Sousa Mark Gerstein Gregory E. Crawford Nenad Šestan Alexej Abyzov Flora M. Vaccarino Schahram Akbarian Joon‐Yong An Christoper Armoskus Allison E. Ashley‐Koch Thomas G. Beach Judson Belmont Jaroslav Bendl Tyler Borrman Leanne Brown Miguel Brown Mimi Brown Tonya M. Brunetti Julien Bryois Emily E. Burke Adrian Camarena Becky C. Carlyle Yooree Chae Alexander W. Charney Chao Chen Lijun Cheng Adriana Cherskov Jinmyung Choi Declan Clarke Leonardo Collado‐Torres Rujia Dai Luis de la Torre-Ubieta Diane M. Del Valle Olivia Devillers Stella Dracheva Prashant S. Emani Oleg V. Evgrafov Peggy Farnham Dominic Fitzgerald Elie Flatow Nancy Francoeur John F. Fullard Michael J. Gandal Tianliuyun Gao Melanie E. Garrett Daniel H. Geschwind Gina Giase Kiran Girdhar Paola Giusti‐Rodríguez Fernando S. Goes Thomas Goodman Kay Grennan Mengting Gu Gamze Gürsoy Evi Hadjimichael Chang-Gyu Hahn Vahram Haroutunian Mads E. Hauberg Gabriel E. Hoffman Jack Huey Thomas M. Hyde Nikolay A. Ivanov Rivka Jacobov Andrew E. Jaffe Yan Jiang Yi Jiang Graham D. Johnson Bibi Kassim Amira Kefi Yunjung Kim Robert R. Kitchen Joel E. Kleiman James A. Knowles Alexey Kozlenkov Mingfeng Li Zhen Li Barbara K. Lipska Chunyu Liu Shuang Liu Lara M. Mangravite Jessica Mariani Eugenio Mattei Daniel J. Miller J. Russell Moore Angus C. Nairn Fábio C. P. Navarro Royce Park Mette A. Peters Dalila Pinto

Genes implicated in neuropsychiatric disorders are active human fetal brain, yet difficult to study a longitudinal fashion. We demonstrate that organoids from pluripotent cells model cerebral cortical development on the molecular level before 16 weeks postconception. A multiomics analysis revealed differentially genes and enhancers, with greatest changes occurring at transition stem progenitors. Networks of converging gene enhancer modules were assembled into six four global patterns...

10.1126/science.aat6720 article EN Science 2018-12-14

The corticospinal (CS) tract is involved in controlling discrete voluntary skilled movements mammals. CS arises exclusively from layer (L) 5 projection neurons of the cerebral cortex, and its formation requires L5 activity Fezf2 (Fezl, Zfp312). How this L5-specific pattern expression axonal connectivity established with such remarkable fidelity had remained elusive. Here we show that transcription factor TBR1 directly binds locus represses L6 corticothalamic to restrict origin L5. In Tbr1...

10.1073/pnas.1016723108 article EN Proceedings of the National Academy of Sciences 2011-02-01
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