A5038208095- Plant Pathogens and Fungal Diseases
- Horticultural and Viticultural Research
- Plant Physiology and Cultivation Studies
- Genomics and Phylogenetic Studies
- Plant Disease Resistance and Genetics
- Chromosomal and Genetic Variations
- Genetic diversity and population structure
- Plant and Fungal Species Descriptions
- Plant and animal studies
- Yeasts and Rust Fungi Studies
- Identification and Quantification in Food
- Genetic Mapping and Diversity in Plants and Animals
- Plant-based Medicinal Research
- Flowering Plant Growth and Cultivation
- Plant Stress Responses and Tolerance
- Botanical Studies and Applications
- Plant and Fungal Interactions Research
- Plant Gene Expression Analysis
- Berberine and alkaloids research
- Environmental DNA in Biodiversity Studies
- Ecology and Conservation Studies
- Alkaloids: synthesis and pharmacology
- Plant Reproductive Biology
Myongji University
2015-2022
Korea Forest Service
2017-2019
Samsung (South Korea)
2013
National Academy of Agricultural Science
2009-2010
Rural Development Administration
2008-2010
Abstract Background Brassica rapa is one of the most economically important vegetable crops worldwide. Owing to its agronomic importance and phylogenetic position, B. provides a crucial reference understand polyploidy-related crop genome evolution. The high degree sequence identity remarkably conserved structure between Arabidopsis genomes enables comparative tiling sequencing using sequences as references select counterpart regions in , which strong challenge structural genomics. Results We...
Hybridization is an important evolutionary process that results in increased plant diversity. Flowering Prunus includes popular cherry species are appreciated worldwide for their flowers. The ornamental characteristics were acquired both naturally and through artificially hybridizing with heterozygous genomes. Therefore, the genome of hybrid flowering presents challenges genomics biology.We use long reads to sequence analyze highly wild yedoensis. assembly covers > 93% gene space; annotation...
The species Brassica rapa includes important vegetable and oil crops. It also serves as an excellent model system to study polyploidy-related genome evolution because of its paleohexaploid ancestry close evolutionary relationships with Arabidopsis thaliana other larger genomes. Therefore, sequence will be used accelerate both basic research on applied across the cultivated species.We have determined analyzed B. chromosome A3. We obtained 31.9 Mb sequences, organized into nine contigs, which...
The genus Brassica includes the most extensively cultivated vegetable crops worldwide. Investigation of genome presents excellent challenges to study plant evolution and divergence gene function associated with polyploidy hybridization. A physical map B. rapa is a fundamental tool for analysis "A" structure. Integration an existing genetic by linking markers BAC clones in sequencing pipeline provides crucial resource ongoing effort assembly whole sequences.A genome-wide was constructed...
Radish (Raphanus sativus L.) is an important root vegetable crop in the family Brassicaceae, which provides diverse nutrients for human health and closely related to Brassica species. Recently, we sequenced assembled radish genome into nine chromosome pseudomolecules. In addition, developed genomic resources, including genetic maps, molecular markers, transcriptome, genome-wide methylation variome data. this study, describe database (RadishGD), details of data sets that generated web...
The complete genome of Vaccinium oldhamii plastid was sequenced and analyzed in this study. V. a circular 173,245 bp with 33 genes, including 88 protein, 37 tRNA, eight rRNA genes. Phylogenetic analysis showed that species were the first branching taxon In Ericaceae.
We determined the complete chloroplast DNA sequence of Aconitum chiisanense Nakai, a rare species endemic to Korea. The genome is 155 934 bp in length and contains 4 rRNA, 30 tRNA, 78 protein-coding genes. Phylogenetic analysis revealed that A. closely related barbatum var. puberulum. Sequence comparison with other Ranunculaceae chloroplasts identified unique deletion rps16 gene can serve as molecular marker for identification.
The complete chloroplast (cp) genome sequence of Larix kaempferi and L. olgensis var. koreana were determined by Ion torrent Platform sequencing in this study. cp was 122,158bp consists two inverted repeat (IR) regions 436bp each, a large single-copy (LSC) region 65,394bp, small (SSC) 55,892bp. 122,573bp length, consisting IRs (436bp), one LSC (65,597bp), SSC (56,104bp), is longer than that kaempferi. contained 110 genes, including 71 protein-coding 35 tRNA 4 ribosomal RNA genes. 13 genes...
The complete chloroplast (cp) genome sequence of Actinidia rufa was determined by next-generation sequencing in this study. whole cp 156,543 bp length, containing a large single-copy (LSC) 88,435 and small (SSC) region 20,307 bp, which separated pair 23,900 inverted repeat (IR) regions. contained 131 genes, including 84 protein-coding 39 tRNA 8 ribosomal RNA genes. Two events were found the Actinidiaceae genome. One deletion clpP gene other trnfM-CAU same direction LSC region. phylogenetic...
Background: Identifying and characterizing genetic variation can clarify the molecular basis of biological phenomena in plants. In particular, related or morphologically similar species be distinguished by markers. Pinus densiflora Siebold & Zucc. is a that distributed Korean peninsula, Japanese archipelago, China's Shandong Manchu Provinces has long been harvested for timber. However, it difficult to distinguish P. from sylvestris L. both phylogenetically. The complete chloroplast...
Fraxinus chiisanensis is endemic to Korea and restricted local habitats with an extremely limited population size. The chloroplast genomic information can be used formulate a comprehensive conservation strategy. In this study, the complete (cp) genome sequence of F. was determined using next-generation sequencing. entire cp 155,571 bp in length. It contained large single-copy (LSC) small (SSC) regions 86,412 17,767 bp, respectively, which were separated by pair 25,696 inverted repeat (IR)...
Background: Identifying and characterizing genetic variation can clarify the molecular basis of biological phenomena in plants. In particular, related or morphologically similar species be distinguished by markers. Pinus densiflora Siebold & Zucc. is a that distributed Korean peninsula, Japanese archipelago, China's Shandong Manchu Provinces has long been harvested for timber. However, it difficult to distinguish P. from sylvestris L. both phylogenetically. The complete chloroplast...