Jonatan Isaksson

ORCID: 0000-0003-3934-4241
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About
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Research Areas
  • Plant-Microbe Interactions and Immunity
  • Wheat and Barley Genetics and Pathology
  • Plant pathogens and resistance mechanisms
  • Plant Disease Resistance and Genetics
  • Transgenic Plants and Applications
  • Plant Pathogens and Resistance
  • Lichen and fungal ecology
  • Plant Pathogens and Fungal Diseases
  • Mycorrhizal Fungi and Plant Interactions
  • Agriculture and Biological Studies
  • Plant Virus Research Studies
  • Structural Engineering and Vibration Analysis
  • Marine and fisheries research
  • Geotechnical Engineering and Soil Mechanics
  • Endoplasmic Reticulum Stress and Disease
  • Plant Water Relations and Carbon Dynamics
  • Botany and Plant Ecology Studies
  • Asian Geopolitics and Ethnography
  • Grouting, Rheology, and Soil Mechanics
  • Crustacean biology and ecology
  • Geotechnical Engineering and Soil Stabilization
  • Powdery Mildew Fungal Diseases
  • Plant Pathogenic Bacteria Studies
  • Soil and Unsaturated Flow
  • Genetic diversity and population structure

University of Zurich
2019-2025

Chalmers University of Technology
2023-2025

Swedish University of Agricultural Sciences
2022

Max Planck Institute for Plant Breeding Research
2022

University of Vermont
2018

The wheat Pm3 resistance gene against the powdery mildew pathogen occurs as an allelic series encoding functionally different immune receptors which induce upon recognition of isolate-specific avirulence (AVR) effectors from pathogen. Here, we describe identification five effector proteins pathogens wheat, rye, and wild grass Dactylis glomerata, specifically recognized by PM3B, PM3C PM3D receptors. Together with earlier identified AVRPM3A2/F2, AVRs PM3B/C, (AVRPM3B2/C2), (AVRPM3D3) belong to...

10.1038/s41467-019-10274-1 article EN cc-by Nature Communications 2019-05-23

Introgressions of chromosomal segments from related species into wheat are important sources resistance against fungal diseases. The durability and effectiveness introgressed genes upon agricultural deployment is highly variable—a phenomenon that remains poorly understood, as the corresponding avirulence largely unknown. Until its breakdown, Pm17 gene rye to provided broad powdery mildew ( Blumeria graminis ). Here, we used quantitative trait locus (QTL) mapping identify effector AvrPm17 ....

10.1073/pnas.2108808119 article EN cc-by Proceedings of the National Academy of Sciences 2022-07-20

Plant defense responses to pathogens are induced after direct or indirect perception of effector proteins their activity on host proteins. In fungal-plant interactions, relatively little is known if in addition avirulence effectors and immune receptors, other contribute specific recognition. The nucleotide-binding leucine-rich repeat (NLR) receptor Pm2a wheat recognizes the fungal powdery mildew AvrPm2. We found that predicted zinc finger TaZF interacts with both protein AvrPm2 as well NLR...

10.1016/j.xplc.2023.100769 article EN cc-by-nc-nd Plant Communications 2023-11-17

The impact of pile installation in soft soils on its surroundings has been numerically investigated with a focus the response an existing piled structure. originality is parameterised 3D Finite Element Analyses far-field soil-structure-interaction scenarios, <i>i.e.</i>, interactions that are largely driven by mass-displacements. A main finding geometry, includes number and length newly installed piles, distance between two groups also to stiff boundaries system (in field...

10.1139/cgj-2024-0387 article EN Canadian Geotechnical Journal 2025-01-13

ABSTRACT Plant nucleotide‐binding leucine‐rich repeat (NLR) proteins are intracellular immune receptors that directly or indirectly perceive pathogen‐derived effector to induce an response. NLRs display diverse subcellular localisations, which associated with the capacity of receptor confer disease resistance and recognise its corresponding avirulence effector. In wheat, NLR PM3b recognises wheat powdery mildew AVRPM3 b2/c2 we examined molecular mechanism underlying this recognition. We show...

10.1111/mpp.70054 article EN cc-by-nc Molecular Plant Pathology 2025-02-01

Abstract Two genetically distinct lineages of European green crabs ( Carcinus maenas ) were independently introduced to eastern North America, the first in early 19th century and second late 20th century. These came into secondary contact southeastern Nova Scotia, Canada NS ), where they hybridized, producing latitudinal genetic clines. Previous studies have documented a persistent southward shift clines different marker types, consistent with existing dispersal recruitment pathways. We...

10.1111/eva.12657 article EN cc-by Evolutionary Applications 2018-06-08

Abstract Introgressions of chromosomal segments from related species into wheat are important sources resistance against fungal diseases. The durability and effectiveness introgressed genes upon agricultural deployment is highly variable - a phenomenon that remains poorly understood as the corresponding avirulence largely unknown. Until its breakdown, Pm17 gene rye to provided broad powdery mildew ( Blumeria graminis ). Here, we used QTL mapping identify effector AvrPm17 . It encoded by two...

10.1101/2021.03.09.433749 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-03-10

Plant nucleotide-binding leucine-rich repeat (NLR) proteins are intracellular immune receptors that directly or indirectly perceive pathogen derived effector to induce an response. NLRs display diverse sub-cellular localizations, which associated with the capacity of receptor confer disease resistance and recognize its corresponding avirulence effector. In wheat, NLR PM3b recognizes wheat powdery mildew AVRPM3 b2/c2 we examined molecular mechanism underlying this recognition. We show other...

10.1101/2024.09.27.615346 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-09-28

Lichens are an ancient symbiosis comprising the thalli of lichen-forming fungi, their photoautotrophic partners and microbiome. So far, they were poorly studied at genome sequence level. Here, we present a reference metagenome for holobiont Cladonia rangiformis . Using long read sequences from entire symbiotic complex, plus short libraries 28 additional diverse European lichen samples, able to separate 20 individual species. We constructed chromosome-scale assemblies C. fungus its...

10.1101/2024.12.24.630239 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2024-12-24

To successfully colonize the living tissue of its host, fungal wheat powdery mildew pathogen produces diverse effector proteins that are suggested to reprogram host defense responses and physiology. When recognized by immune receptors, these become avirulence (AVR) effectors. Several sequence-diverse AVRPM3 effectors suppressor AVRPM3-PM3 recognition (SVRPM3 a1/f1 ) involved in triggering allele-specific, Pm3-mediated resistance, but molecular mechanisms controlling their function cell...

10.1101/2024.12.30.629670 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2024-12-30

Lime-cement columns are a common form of ground improvement used in the Nordic countries to improve engineering properties soft soils. The strength and stiffness lime-cement mixed clay, however, heterogeneous. Hence, characterisation extent variability is essential optimise performance columns. This paper presents an integrated approach characterise samples from 1 year old natural sensitive Centralen project site Gothenburg, Sweden. A novel image-based method proposed spatial at laboratory...

10.2139/ssrn.4600941 preprint EN 2023-01-01

Wheat powdery mildew is an important fungal pathogen of wheat with obligatory biotrophic lifestyle (a parasite that can only develop on a living host). We investigated the genetics this host-pathogen interaction by using phenotyping and PCR assays to detect genes in both mildew, which are known determinants outcome these interactions (resistance or susceptibility). The increase decrease virulence, while provide specific immunity against isolates expressing corresponding avirulence genes....

10.1080/00219266.2022.2147574 article EN Journal of Biological Education 2022-12-15
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