From Peptidome to PRIDE: Public proteomics data migration at a large scale

• DOI: 10.1002/pmic.201200514
• Publication Date: 2013-03-27T08:16:53Z
• Authors: Attila Csordas; Rui Wang; Daniel Ríos; Florian Reisinger; Joseph M. Foster; Douglas J. Slotta; Juan Antonio Vizc...; Henning Hermjakob
• Keywords: Pride; Proteogenomics

The PRIDE database, developed and maintained at the European Bioinformatics Institute (EBI), is one of most prominent data repositories dedicated to high throughput MS-based proteomics data. Peptidome, by National Center for Biotechnology Information (NCBI) as a sibling resource PRIDE, was discontinued due funding constraints in April 2011. A joint effort between two teams started soon after Peptidome closure ensure that were not "lost" wider community exporting it PRIDE. As result, low terabyte range have been migrated from made publicly available under experiment accessions 17 900-18 271, representing 54 projects, ~53 million mass spectra, ~10 peptide identifications, ~650,000 protein ~1.1 biologically relevant modifications, 28 species, more than 30 different labs.