An effective strategy for ligand-mediated pulldown of the HER2/HER3/NRG1β heterocomplex and cryo-EM structure determination at low sample concentrations

• DOI: 10.1016/bs.mie.2022.03.049
• Publication Date: 2022-04-20T18:31:26Z
• Authors: Raphael Trenker; Devan Diwanji; Kliment A. Verba; Natalia Jura
• Keywords: Biochemistry & Molecular Biology; Receptor, ErbB-3; Receptor, ErbB-2; Breast Neoplasms; Ligands; ErbB-2; Receptor tyrosine kinases; ErbB-3; Breast Cancer; erbB-3; 2.1 Biological and endogenous factors; Humans; Aetiology; Ligand binding; erbB-2; Cancer; Kinase activation; Cryoelectron Microscopy; Growth factor; Signaling; 3. Good health; Protein purification; Female; Biochemistry and Cell Biology; Cryo-electron microscopy; Structural biology; Receptor

Obtaining high-resolution structures of Receptor Tyrosine Kinases that visualize extracellular, transmembrane and intracellular kinase regions simultaneously is an eagerly pursued but still unmet challenge of structural biology. The Human Epidermal Growth Factor Receptor 3 (HER3) that has a catalytically inactive kinase domain (pseudokinase) forms a potent signaling complex upon binding of growth factor neuregulin 1β (NRG1β) and upon dimerization with a close homolog, the HER2 receptor. The HER2/HER3/NRG1β complex is often referred to as an oncogenic driver in breast cancer and is an attractive target for anti-cancer therapies. After overcoming significant hurdles in isolating sufficient amounts of the HER2/HER3/NRG1β complex for structural studies by cryo-electron microscopy (cryo-EM), we recently obtained the first high-resolution structures of the extracellular portion of this complex. Here we describe a step-by-step protocol for obtaining a stable and homogenous HER2/HER3/NRG1β complex for structural studies and our recommendation for collecting and processing cryo-EM data for this sample. We also show improved EM density for the transmembrane and kinase domains of the receptors, which continue to evade structural determination at high resolution. The discussed strategies are tunable and applicable to other membrane receptor complexes.