Discovery of a potent and selective PARP1 degrader promoting cell cycle arrest via intercepting CDC25C-CDK1 axis for treating triple-negative breast cancer

• DOI: 10.1016/j.bioorg.2023.106952
• Publication Date: 2023-11-08T12:29:39Z
• Authors: Yiquan Wu; Mingfei Wu; Xiaoli Zheng; Hengyuan Yu; Xinfei Mao; Yuyuan Jin; Yanhong Wang; Ao Pang; Jingyu Zhang; Shenxin Zeng; Tengfei Xu; Yong Chen; Bo Zhang; Nengming Lin; Haibin Dai; Yuwei Wang; Xiaojun Yao; Xiaowu Dong; Wenhai Huang; Jinxin Che
• Keywords: Proteomics; Mice; Nitrogen; Cell Line, Tumor; CDC2 Protein Kinase; Poly (ADP-Ribose) Polymerase-1; Humans; Animals; cdc25 Phosphatases; Triple Negative Breast Neoplasms; Cell Cycle Checkpoints; 3. Good health; Cell Proliferation

PARP1 is a multifaceted component of DNA repair and chromatin remodeling, making it an effective therapeutic target for cancer therapy. The recently reported proteolytic targeting chimera (PROTAC) could effectively degrade PARP1 through the ubiquitin-proteasome pathway, expanding the therapeutic application of PARP1 blocking. In this study, a series of nitrogen heterocyclic PROTACs were designed and synthesized through ternary complex simulation analysis based on our previous work. Our efforts have resulted in a potent PARP1 degrader D6 (DC50 = 25.23 nM) with high selectivity due to nitrogen heterocyclic linker generating multiple interactions with the PARP1-CRBN PPI surface, specifically. Moreover, D6 exhibited strong cytotoxicity to triple negative breast cancer cell line MDA-MB-231 (IC50 = 1.04 µM). And the proteomic results showed that the antitumor mechanism of D6 was found that intensifies DNA damage by intercepting the CDC25C-CDK1 axis to halt cell cycle transition in triple-negative breast cancer cells. Furthermore, in vivo study, D6 showed a promising PK property with moderate oral absorption activity. And D6 could effectively inhibit tumor growth (TGI rate = 71.4 % at 40 mg/kg) without other signs of toxicity in MDA-MB-321 tumor-bearing mice. In summary, we have identified an original scaffold and potent PARP1 PROTAC that provided a novel intervention strategy for the treatment of triple-negative breast cancer.