Endoplasmic reticulum network heterogeneity guides diffusive transport and kinetics

• DOI: 10.1016/j.bpj.2023.06.022
• Publication Date: 2023-07-03T06:12:30Z
• Authors: Zubenelgenubi C. ...; Katherine Koning; Molly Vanderwerp; Lorna Cohen; Laura M. Westrate; Elena F. Koslover
• Keywords: Kinetics; Protein Transport; Underpinning research; 1.1 Normal biological development and functioning; Physical Sciences; Chemical Sciences; Biophysics; Proteins; Biological Transport; Generic health relevance; Articles; Biological Sciences; Endoplasmic Reticulum

The endoplasmic reticulum (ER) is a dynamic network of interconnected sheets and tubules that orchestrates the distribution of lipids, ions, and proteins throughout the cell. The impact of its complex, dynamic morphology on its function as an intracellular transport hub remains poorly understood. To elucidate the functional consequences of ER network structure and dynamics, we quantify how the heterogeneity of the peripheral ER in COS7 cells affects diffusive protein transport. In vivo imaging of photoactivated ER membrane proteins demonstrates their nonuniform spreading to adjacent regions, in a manner consistent with simulations of diffusing particles on extracted network structures. Using a minimal network model to represent tubule rearrangements, we demonstrate that ER network dynamics are sufficiently slow to have little effect on diffusive protein transport. Furthermore, stochastic simulations reveal a novel consequence of ER network heterogeneity: the existence of "hot spots" where sparse diffusive reactants are more likely to find one another. ER exit sites, specialized domains regulating cargo export from the ER, are shown to be disproportionately located in highly accessible regions, further from the outer boundary of the cell. Combining in vivo experiments with analytic calculations, quantitative image analysis, and computational modeling, we demonstrate how structure guides diffusive protein transport and reactions in the ER.