Genetic diversity and population structure of miiuy croaker populations in East China Sea revealed by the mitochondrial DNA control region sequence

• DOI: 10.1016/j.bse.2011.06.009
• Publication Date: 2011-06-29T05:28:27Z
• Authors: Yuanzhi Cheng; Xiaoxiao Jin; Ge Shi; Rixin Wang; Tianjun Xu
• Keywords: mtDNA control region; Nucleotide diversity; Demographic history; D-loop

Abstract The genetic diversity and population structure of the miiuy croaker ( Miichthys miiuy ) were investigated. Seventy-six individuals were sampled from six localities of the East China Sea. Genetic variation in DNA sequences was examined from the 5′-end of the mitochondrial DNA control region. High levels of haplotype diversity ( h = 0.99333) in the control region were detected, indicating a high level of genetic diversity. A total of 81 polymorphic sites were found, and 65 haplotypes were defined. The results of AMOVA analysis indicated that 97.9% of the genetic variation contained within populations and 2.14% occurred among populations. No significant genealogical branches or clusters were recognized on the NJ tree. Tests of neutral evolution and analysis of mismatch distribution suggested that miiuy croaker might have undergone a population expansion. The knowledge on genetic diversity and genetic structure will be crucial to establish appropriate fishery management stocks for the species.