Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs

• DOI: 10.1016/j.drudis.2016.02.005
• Publication Date: 2016-02-15T02:47:53Z
• Authors: Adrian Whitty; Mengqi Zhong; Lauren Viarengo; Dmitri Beglov; David R. Hall; Sandor Vajda
• Keywords: Models, Molecular; Molecular Weight; 0303 health sciences; 03 medical and health sciences; Macrocyclic Compounds; Drug Design; Humans

Key to the pharmaceutical utility of certain macrocyclic drugs is a 'chameleonic' ability to change their conformation to expose polar groups in aqueous solution, but bury them when traversing lipid membranes. Based on analysis of the structures of 20 macrocyclic compounds that are approved oral drugs, we propose that good solubility requires a topological polar surface area (TPSA, in Å(2)) of ≥0.2×molecular weight (MW). Meanwhile, good passive membrane permeability requires a molecular (i.e., 3D) PSA in nonpolar environments of ≤140Å(2). We show that one or other of these limits is almost invariably violated for compounds with MW>600Da, suggesting that some degree of chameleonic behavior is required for most high MW oral drugs.