Discovery of new azoles with potent activity against Candida spp. and Candida albicans biofilms through virtual screening

• DOI: 10.1016/j.ejmech.2019.06.083
• Publication Date: 2019-06-29T14:29:46Z
• Authors: Suat Sari; Didem Kart; Naile Öztürk; F. Betül Kaynak; Melis Gencel; Gülce Taşkor; Arzu Karakurt; Selma Saraç; Şebnem Eşsiz; Sevim Dalkara
• Keywords: Azoles; Models, Molecular; 0301 basic medicine; Design; Antifungal Agents; Cell Survival; Cytotoxicity; Drug Evaluation, Preclinical; Microbial Sensitivity Tests; Crystallography, X-Ray; Cell Line; Structure-Activity Relationship; 03 medical and health sciences; Antifungal Activity; Glide; Candida albicans; Drug Discovery; Humans; General Force-Field; Cyp51; Candida; Molecular-Dynamics; 0303 health sciences; Dose-Response Relationship, Drug; Molecular Structure; Molecular dynamics simulations; Protein; Biofilm; Accurate Docking; Consensus scoring; 3. Good health; N/A; Biofilms; Constraints; Molecular docking; Derivatives

Systemic candidiasis is a rampant bloodstream infection of Candida spp. and C. albicans is the major pathogen isolated from infected humans. Azoles, the most common class of antifungals which suffer from increasing resistance, and especially intrinsically resistant non-albicans Candida (NAC) species, act by inhibiting fungal lanosterol 14α-demethylase (CYP51). In this study we identified a number of azole compounds in 1-(2,4-dichlorophenyl)-2-(1H-imidazol-1-yl)ethanol/ethanone oxime ester structure through virtual screening using consensus scoring approach, synthesized and tested them for their antifungal properties. We reached several hits with potent activity against azole-susceptible and azole-resistant Candida spp. as well as biofilms of C. albicans. 5i's minimum inhibitor concentration (MIC) was 0.125 μg/ml against C. albicans, 0.5 μg/ml against C. krusei and 1 μg/ml against azole-resistant C. tropicalis isolate. Considering the MIC values of fluconazole against these fungi (0.5, 32 and 512 μg/ml, respectively), 5i emerged as a highly potent derivative. The minimum biofilm inhibitor concentration (MBIC) of 5c, 5j, and 5p were 0.5 μg/ml (and 5i was 2 μg/ml) against C. albicans biofilms, lower than that of amphotericin B (4 μg/ml), a first-line antifungal with antibiofilm activity. In addition, the active compounds showed neglectable toxicity to human monocytic cell line. We further analyzed the docking poses of the active compounds in C. albicans CYP51 (CACYP51) homology model catalytic site and identified molecular interactions in agreement with those of known azoles with fungal CYP51s and mutagenesis studies of CACYP51. We observed the stability of CACYP51 in complex with 5i in molecular dynamics simulations.