Identification and verification of hub microRNAs in varicocele rats through high-throughput sequencing and bioinformatics analysis

• DOI: 10.1016/j.reprotox.2020.09.012
• Publication Date: 2020-10-03T14:58:27Z
• Authors: Ningjing Ou; Yuxuan Song; Yawei Xu; Yongjiao Yang; Xiaoqiang Liu
• Keywords: Male; 0303 health sciences; Computational Biology; High-Throughput Nucleotide Sequencing; 3. Good health; Rats, Sprague-Dawley; Semen Analysis; MicroRNAs; 03 medical and health sciences; Gene Expression Regulation; Testis; Varicocele; Sperm Motility; Animals; Gene Regulatory Networks; Protein Interaction Maps

Varicocele (VC) is the most common treatable cause of infertility, but it is difficult to distinguish fertile from infertile VC populations because the pathogenesis is unclear. In order to study the related mechanism of VC causing male sterility, we made VC rats model by surgery, analyzed the rat epididymal sperm, and use the transcriptome sequencing compared all the miRNA expression differences in testicular tissue between VC rats, surgical treatment rats and control rats. The differentially expressed miRNAs (DEMs) of testicular tissue were also screened by the edgeR package in R software. We found that rno-miR-210-3p, rno-miR-6316, rno-miR-190a-5p and rno-miR-135b-5p were key miRNAs for VC and they were all up-regulated in VC samples and they are enriched in regulation of immune system process (GO:0002683), innate immune system (R-RNO-168,249) and apoptotic signaling pathway (GO:0097190). We hypothesize that negative regulation of immune system and apoptosis play an important role in the occurrence and development of VC, and it is induced the abnormal expression of target genes (such as Kitlg, Cxcl12) may involve in the development of VC associated infertility. Four key miRNAs, rno-miR-210-3p, rno-miR-6316, rno-miR-190a-5p and rno-miR-135b-5p, as well as their target genes are critical in VC, which could have attractive applications to provide new biomarkers for VC.