ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration
Male
Nicotiana
Science
Primary Cell Culture
610
Retinal Pigment Epithelium
Complex Mixtures
Article
Histone Deacetylases
Epigenesis, Genetic
Macular Degeneration
03 medical and health sciences
Smoke
Humans
Eye Proteins
Aged
Aged, 80 and over
0303 health sciences
Q
High-Throughput Nucleotide Sequencing
Epithelial Cells
Chromatin
Case-Control Studies
Female
Genome-Wide Association Study
Transcription Factors
DOI:
10.1038/s41467-018-03856-y
Publication Date:
2018-04-04T14:29:47Z
AUTHORS (15)
ABSTRACT
AbstractAge-related macular degeneration (AMD) is a significant cause of vision loss in the elderly. The extent to which epigenetic changes regulate AMD progression is unclear. Here we globally profile chromatin accessibility using ATAC-Seq in the retina and retinal pigmented epithelium (RPE) from AMD and control patients. Global decreases in chromatin accessibility occur in the RPE with early AMD, and in the retina of advanced disease, suggesting that dysfunction in the RPE drives disease onset. Footprints of photoreceptor and RPE-specific transcription factors are enriched in differentially accessible regions (DARs). Genes associated with DARs show altered expression in AMD. Cigarette smoke treatment of RPE cells recapitulates chromatin accessibility changes seen in AMD, providing an epigenetic link between a known risk factor for AMD and AMD pathology. Finally, overexpression of HDAC11 is partially responsible for the observed reduction in chromatin accessibility, suggesting that HDAC11 may be a potential new therapeutic target for AMD.
SUPPLEMENTAL MATERIAL
Coming soon ....
REFERENCES (69)
CITATIONS (147)
EXTERNAL LINKS
PlumX Metrics
RECOMMENDATIONS
FAIR ASSESSMENT
Coming soon ....
JUPYTER LAB
Coming soon ....