GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems

• DOI: 10.1093/bioinformatics/9.5.563
• Publication Date: 2007-01-04T08:12:37Z
• Authors: Pedro Mendes
• Keywords: Software package; Interface (matter); Sequence (biology)

GEPASI is a software system for modelling chemical and biochemical reaction networks on computers running Microsoft Windows. For any of up to 45 metabolites reactions, each with user-defined or one 35 predefined rate equations, can produce trajectories the metabolite concentrations obtain steady state (if it does exist). When steady-state solutions are produced, elasticity control coefficients, as defined in metabolic analysis, calculated. also allows automatic generation sequence simulations different combinations parameter values, effectively scanning hyper-solid space. Together ability columnar data files, these features allow both very quick systematic study pathway models. The source code (in C) available request from author, while user interface dependent having MS-Windows operating system, numerical part portable other systems. suitable research educational purposes. Although was written pathways mind, equally be used simulate dynamical