Metavir: a web server dedicated to virome analysis

• DOI: 10.1093/bioinformatics/btr519
• Publication Date: 2011-09-13T04:22:25Z
• Authors: Simon Roux; Michaël Faubladier; Antoine Mahul; Nils Paulhe; Aurélien Bernard; Didier Debroas; François Enault
• Keywords: 0301 basic medicine; Internet; 0303 health sciences; 03 medical and health sciences; [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]; Viruses; Genome, Viral; Metagenomics; Phylogeny; Software; [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]; 3. Good health

Abstract Summary: Metavir is a web server dedicated to the analysis of viral metagenomes (viromes). In addition to classical approaches for analyzing metagenomes (general sequence characteristics, taxonomic composition), new tools developed specifically for viral sequence analysis make it possible to: (i) explore viral diversity through automatically constructed phylogenies for selected marker genes, (ii) estimate gene richness through rarefaction curves and (iii) perform cross-comparison against other viromes using sequence similarities. Metavir is thus unique as a platform that allows a comprehensive virome analysis. Availability: Metavir is freely available online at: http://metavir-meb.univ-bpclermont.fr Contact: [e-mail] Supplementary Information: Supplementary data are available at Bioinformatics online.