shinyCircos: an R/Shiny application for interactive creation of Circos plot

• DOI: 10.1093/bioinformatics/btx763
• Publication Date: 2017-11-23T12:10:12Z
• Authors: Yiming Yu; Yidan Ouyang; Wen Yao
• Keywords: 0303 health sciences; 03 medical and health sciences; Computer Graphics; Humans; Genomics; Software

Abstract

Summary Creation of Circos plot is one of the most efficient approaches to visualize genomic data. However, the installation and use of existing tools to make Circos plot are challenging for users lacking of coding experiences. To address this issue, we developed an R/Shiny application shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installed either on computers for personal use or on local or public servers to provide online use to the community. Furthermore, various types of Circos plots could be easily generated and decorated with simple mouse-click.

Availability and implementation shinyCircos and its manual are freely available at https://github.com/venyao/shinyCircos. shinyCircos is deployed at https://yimingyu.shinyapps.io/shinycircos/ and http://shinycircos.ncpgr.cn/ for online use.