Azospirillum rugosum sp. nov., isolated from oil-contaminated soil

• DOI: 10.1099/ijs.0.65065-0
• Publication Date: 2008-04-08T23:03:27Z
• Authors: C. C. Young; H. Hupfer; C. Siering; M.-J. Ho; A. B. Arun; W.-A. Lai; P. D. Rekha; F.-T. Shen; M.-H. Hung; W.-M. Chen; A. F. Yassin
• Keywords: DNA, Bacterial; 0301 basic medicine; 0303 health sciences; Ubiquinone; Fatty Acids; Molecular Sequence Data; RNA, Bacterial; 03 medical and health sciences; Phenotype; Species Specificity; Genes, Bacterial; RNA, Ribosomal, 16S; Terminology as Topic; Soil Pollutants; Azospirillum; Fuel Oils; Phylogeny; Soil Microbiology

The taxonomic status of a light-orange-coloured bacterial isolate from an oil-contaminated soil sample was characterized by using a polyphasic taxonomic approach. Comparative analysis of 16S rRNA gene sequences demonstrated that the isolate belonged phylogenetically to the genus Azospirillum, with Azospirillum canadense, Azospirillum brasilense and Azospirillum doebereinerae as its closest phylogenetic relatives (97.3, 97.0 and 97.0 % similarity, respectively). DNA-DNA pairing studies showed that the unidentified organism displayed 25.0, 17.0 and 19.0 % relatedness to the type strains of A. brasilense, A. canadense and A. doebereinerae, respectively. The generic assignment was confirmed by chemotaxonomic data, which revealed a fatty acid profile that was characteristic of the genus Azospirillum, consisting of straight-chain saturated and unsaturated fatty acids with C18 : 1 omega 7c as the major fatty acid, and ubiquinone with ten isoprene units (Q-10) as the predominant respiratory quinone. On the basis of both the phenotypic and molecular genetic evidence, it is proposed that the unknown isolate be classified as a representative of a novel species of the genus Azospirillum, for which the name Azospirillum rugosum sp. nov. is proposed. The type strain is IMMIB AFH-6T (=CCUG 53966T=DSM 19657T).