BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data

• DOI: 10.1186/gb-2002-3-8-software0003
• Publication Date: 2002-09-26T12:07:27Z
• Authors: Lao H Saal; Carl Troein; Johan Vallon-Chri...; Sofia Gruvberger; Åke Borg; Carsten Peterson
• Keywords: FOS: Computer and information sciences; Internet; 0303 health sciences; Bioinformatics; 004; 03 medical and health sciences; FOS: Biological sciences; Genetics; Database Management Systems; DNA microarrays; Cytology; Software; Oligonucleotide Array Sequence Analysis

The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their extracted data matrices, and information about the physical array, the features and reporter molecules. We present a web-based customizable bioinformatics solution called BioArray Software Environment (BASE) for the management and analysis of all areas of microarray experimentation. All software necessary to run a local server is freely available.