PEGR: a flexible management platform for reproducible epigenomic and genomic research

• DOI: 10.1186/s13059-022-02671-5
• Publication Date: 2022-04-19T09:03:24Z
• Authors: Danying Shao; Gretta D. Kellogg; Ali Nematbakhsh; Prashant K. Kuntala; Shaun Mahony; B. Franklin Pugh; William K. M. Lai
• Keywords: Epigenomics; Pace; Human genetics

Abstract Reproducibility is a significant challenge in (epi)genomic research due to the complexity of experiments composed traditional biochemistry and informatics. Recent advances have exacerbated this as high-throughput sequencing data generated at an unprecedented pace. Here, we report development P latform for E pi- G enomic R esearch (PEGR), web-based project management platform that tracks quality controls from conception publication-ready figures, compatible with multiple assays bioinformatic pipelines. It supports rigor reproducibility biochemists working bench, while fully supporting reliability bioinformaticians through integration Galaxy platform.