The low-resolution structure of nHDL reconstituted with DMPC with and without cholesterol reveals a mechanism for particle expansion

Small Angle 0301 basic medicine MESH: Apolipoprotein A-I QD415-436 High-Density Lipoproteins, Pre-beta Biochemistry [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry Mass Spectrometry MESH: Dimyristoylphosphatidylcholine 03 medical and health sciences MESH: Cholesterol Pre-beta apolipoprotein A1 Scattering, Small Angle Humans MESH: Scattering, Small Angle MESH: Mass Spectrometry MESH: Humans small-angle neutron scattering [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] Apolipoprotein A-I Molecular Biology/Structural Biology [q-bio.BM] dimyristoyl phosphatidylcholine nascent high density lipoprotein 540 MESH: High-Density Lipoproteins, Pre-beta Cholesterol MESH: Scattering MESH: High-Density Lipoproteins Dimyristoylphosphatidylcholine
DOI: 10.1194/jlr.m032763 Publication Date: 2013-01-25T01:17:44Z
ABSTRACT
Small-angle neutron scattering (SANS) with contrast variation was used to obtain the low-resolution structure of nascent HDL (nHDL) reconstituted dimyristoyl phosphatidylcholine (DMPC) in absence and presence cholesterol, [apoA1:DMPC (1:80, mol:mol) apoA1:DMPC:cholesterol (1:86:9, mol:mol:mol)]. The overall shape both particles is discoidal apoA1 visualized as an open, contorted, out plane conformation three arms HDL/dimyristoyl without cholesterol (nHDLDMPC) two (nHDLDMPC+Chol). lipid phase nHDLDMPC nHDLDMPC+Chol were oblate ellipsoids, fit well within their respective protein shapes. Modeling studies indicate that folded onto itself nHDLDMPC, making a large hairpin, which also confirmed independently by cross-linking mass spectrometry hydrogen-deuterium exchange (HDX) analyses. In nHDLDMPC+Chol, expanded no hairpin visible. Importantly, despite whole particle open (i.e., not closed belt) observed. Collectively, these data show full length retains architecture dictated its cargo. likely predominantly organized bilayer micelle domain between arms. configuration observed suggests mechanism for accommodating changing cargo quantized expansion structures. Cholesterol from peripheral tissues, such artery wall, transported liver high density lipoprotein (HDL) particles, are continuously remodeled process called reverse transport (1Tall A.R. Yvan-Charvet L. Terasaka N. Pagler T. Wang HDL, ABC transporters, efflux: implications treatment atherosclerosis.Cell Metab. 2008; 7: 365-375Abstract Full Text PDF PubMed Scopus (431) Google Scholar, 2Trigatti B. Rigotti A. Krieger M. role high-density receptor SR-BI metabolism.Curr. Opin. Lipidol. 2000; 11: 123-131Crossref (170) Scholar). highly heterogeneous, varying content (3Barter P.J. Rye K.A. 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While our initial focused use more physiologically relevant species (POPC), because dramatic differences organization super (DSH) earlier based simulations, we felt it reasonable directly interrogate "DMPC discs" (nHDLDMPC). experiment D2O buffer varied matches protein, lipid, nucleic acid), "transparent". addition, selectively deuterating specific macromolecular (in case, apoA1, producing Escherichia coli grown deuterated nutrients), one can further enhance complex reduce interference other (the this case). enables "triangulate" complex, powerful unique tool (26Wu 30Ramakrishnan Distribution RNA 30S ribosomal subunit.Science. 1986; 231: 1562-1564Crossref (29) 31May Nowotny Nierhaus K.H. Inter-protein distances subunit ribosomes.EMBO 1992; 373-378Crossref 32Willumeit Diedrich Forthmann Beckmann Stuhrmann H.B. 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Cells 85% minimal medium (85% D2O, 15% H2O): 6.86 g/l (NH4)2SO4, 1.56 KH2PO4, 6.48 Na2HPO4·2H2O, 0.49 diammonium citrate, 0.25 MgSO4·7H2O, 1.0 ml l−1 (0.5 CaCl2·2H2O, 16.7 FeCl3·6H2O, 0.18 ZnSO4·7H2O, 0.16 CuSO4·5H2O, 0.15 MnSO4·4H2O, CoCl2·6H2O, 20.1 EDTA), 40 mg/l kanamycin hydrogenated glycerol carbon source (5 g/l). Deuterated above SDS-PAGE assess purity apoA1. Because efforts prepare preparations DMPC-driven spontaneous formation led inhomogeneous preparations, prepared modified sodium cholate dialysis method (35Baker P.W. Gamble J.R. Vadas Barter Phospholipid influences ability inhibit endothelial cell adhesion molecule expression.J. 41: 1261-1267Abstract at molar ratio 80:1 DMPC:apoA1 10:80:1 cholesterol:DMPC:apoA1. Subsequently, gel filtration Sephacryl S300 (GE Healthcare) column. dynamic light scattering, nondenaturing PAGE stoichiometry each determined quantifying microphosphorous assay, stable isotope dilution remaining quantified HPLC tandem significant residual present << 0.1 mol%). BS3 cross-linker 200:1 5 min 37°C, experiments carried instrument D22 Institut Laue-Langevin, Grenoble, France, KWS1 Jülich Center Neutron Sciences, Garching, Germany. classical pinhole cameras provide flux. Data collected ∼2 h positions detector (2 5.6 m collimation lengths 2.8 m), (1, 2, 8 4 covered momentum transfer (q) 0.008 Å−1 0.5 Å−1. wavelength λ beam 6 Å 4.5 KWS1. individually map nHDLDMPC. samples 6–8°C 12% (q 0.005–0.304 Å−1) 42% solution 0.007–0.453 Å−1). radius gyration (Rg) Guinier approximation (36Guinier La diffraction des rayons X aux tres petits angles; l'etude de phenomenes ultramicroscopiques.Ann. 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We established value calculating contributions coming SASSIM (39Merzel SASSIM: X-ray associated explicit-atom solvated proteins.Acta 2002; 58: 242-249Crossref (55) included splitting total squared amplitude assigned groups, chains). either positive negative, fact reflects components. Similar experiment, HDLDMPC formed nondeuterated p
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