Interaction of Epe1 With the Heterochromatin Assembly Pathway inSchizosaccharomyces pombe

• DOI: 10.1534/genetics.106.068684
• Publication Date: 2007-04-20T23:43:25Z
• Authors: Sara Isaac; Julian Walfridsson; Tal Zohar; David Lazar; Tamar Kahan; Karl Ekwall; Amikam Cohen
• Keywords: 0301 basic medicine; 0303 health sciences; Chromosomal Proteins, Non-Histone; Recombinant Fusion Proteins; Genes, Fungal; Nuclear Proteins; Chromatin Assembly and Disassembly; Methylation; Histone Deacetylases; Histones; Luminescent Proteins; 03 medical and health sciences; Bacterial Proteins; Microscopy, Fluorescence; Gene Expression Regulation, Fungal; Heterochromatin; Mutation; Schizosaccharomyces; Gene Silencing; Schizosaccharomyces pombe Proteins; Promoter Regions, Genetic

AbstractEpe1 is a JmjC domain protein that antagonizes heterochromatization in Schizosaccharomyces pombe. Related JmjC domain proteins catalyze a histone demethylation reaction that depends on Fe(II) and α-ketoglutarate. However, no detectable demethylase activity is associated with Epe1, and its JmjC domain lacks conservation of Fe(II)-binding residues. We report that Swi6 recruits Epe1 to heterochromatin and that overexpression of epe1+, like mutations in silencing genes or overexpression of swi6+, upregulates expression of certain genes. A significant overlap was observed between the lists of genes that are upregulated by overexpression of epe1+ and those that are upregulated by mutations in histone deacetylase genes. However, most of the common genes are not regulated by Clr4 histone methyltransferase. This suggests that Epe1 interacts with the heterochromatin assembly pathway at the stage of histone deacetylation. Mutational inactivation of Epe1 downregulates ∼12% of S. pombe genes, and the list of these genes overlaps significantly with the lists of genes that are upregulated by mutations in silencing genes and genes that are hyperacetylated at their promoter regions in clr6-1 mutants. We propose that an interplay between the repressive HDACs activity and Epe1 helps to regulate gene expression in S. pombe.