VIB Hackathon on spatial omics tools and methods

• DOI: 10.37044/osf.io/uf7d3
• Publication Date: 2024-06-25T05:08:25Z
• Authors: Benjamin Rombaut; Lotte Pollaris; Chananchida Sang-...; Michiel Ver Cruysse; Robrecht Cannoodt; Frank Vernaillen; Arne Defauw; Julien Mortier; Mayar Ali; Kresimir Bestak; Quentin Blampey; Michele Bortolome...; Paula V M Cauhy; Miraj Cetin; Daniel Dimitrov; Francesca Drummer; Lorenzo Giordani; Aroj Hada; Luuk Harbers; Migual A. Ibarra-...; Paul Kiessling; Laurens Lehner; Susmita Mandal; Benedetta Manzato; Luca Marconato; Claudio Novella-R...; Anastasiia Okhtienko; Giovanni Palla; Daryna Pikulska; Carlos Ariel Puli...; Guillaume Sacchetti; Alexander Sudy; Lotte Van de Vreken; Wouter-Michiel Vi...; Vladislav Vlasov; Sai Nirmayi Yasa; Estella Yixing Dong; Ruth Seurinck; Yvan Saeys
• Keywords: Bioinformatics; Life Sciences

During a three-day hackathon, work was performed on various topics within the field of spatial omics data analysis. The were organized in five workgroups and included benchmarking, pipelines, transcriptomics, proteomics, multi-omics cell-cell communication. Most tools methods considered context Python ecosystem for (SpatialData) single-cell (scverse)