The time is ripe to reverse engineer an entire nervous system: simulating behavior from neural interactions

• DOI: 10.48550/arxiv.2308.06578
• Publication Date: 2023-01-01
• Authors: Haspel, Gal; Baker, Ben; Beets, Isabel; Boyden, Edward S; Brown, Jeffrey; Church, George; Cohen, Netta; Colon-Ramos, Daniel; Dyer, Eva; Fang-Yen, Christo...; Flavell, Steven; Goodman, Miriam B; Hart, Anne C; Izquierdo, Eduardo J; Kagias, Konstantinos; Lockery, Shawn; Lu, Yangning; Marblestone, Adam; Matelsky, Jordan; Mensh, Brett; Pereira, Talmo D; Pfister, Hanspeter; Rajan, Kanaka; Rotstein, Horacio G; Scholz, Monika; Shaevitz, Joshua W.; Shlizerman, Eli; Simeon, Quilee; Skuhersky, Michael A; Tiruvadi, Vineet; Venkatachalam, Vivek; Wei, Donglai; Wester, Brock; Yang, Guangyu Robert; Yemini, Eviatar; Zimmer, Manuel; Kording, Konrad P
• Keywords: Quantitative Biology - Neurons and Cognition; FOS: Biological sciences; Neurons and Cognition (q-bio.NC); 3. Good health

28 pages, 2 figures, opinion paper<br/>Just like electrical engineers understand how microprocessors execute programs in terms of how transistor currents are affected by their inputs, neuroscientists want to understand behavior production in terms of how neuronal outputs are affected by their inputs and internal states. This dependency of neuronal outputs on inputs can be described by a state-dependent input-output (IO)-function. However, to reliably identify these IO-functions, we need to perturb each input and combinations of inputs while observing all the outputs. Here, we argue that such completeness is possible in C. elegans; a complete description that goes all the way from the activity of every neuron to predict behavior. The established and growing toolkit of optophysiology can non-invasively capture and control every neuron's activity and scale to countless experiments. The information from many such experiments can be pooled while capturing the inter-individual variability because neuronal identity and function are largely conserved across individuals. Just like electrical engineers use transistor IO-functions to simulate program execution, we argue that neuronal IO-functions could be used to simulate the impressive breadth of brain states and behaviors of C. elegans.<br/>