The cellular states and fates of shed intestinal cells

• DOI: 10.5281/zenodo.8243077
• Publication Date: 2024-10-03
• Authors: Keren Bahar Halpern; Yael Korem Kohanim; Adi Biram; Yotam Harnik; Adi Egozi; Oran Yakubovsky; Ziv Shulman; Shalev Itzkovitz
• Keywords: Male; Mice; Animals; Epithelial Cells; Intestinal Mucosa; Colitis

Single cell data for "The cellular states and fates of shed intestinal cells" paper. Folder: Count_tables and Objects This folder contains BG subtracted UMI tables and metadata for both the fecal wash UMAP and the fecal/tissue enterocytes combined UMAP 1. BG_subtracted_count_table_all_Fecal_cells_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis 2. BG_subtracted_count_table_all_Fecal_cells_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis. 3. Metadata_all_Fecal_cells_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Fecal_cells_after_filt.txt" 4. Combine_all_Fecal_cells_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Fecal_cells_after_filt.txt 5. BG_subtracted_count_table_all_Enterocytes_before_filt.txt - BG subtracted UMI table of all cells before Seurat filtration and analysis 6. BG_subtracted_count_table_all_Enterocytes_after_filt.txt - BG subtracted UMI table of all cells after Seurat filtration and analysis. 7. Metadata_all_Enterocytes_after_filteration.txt - Metadata for "BG_subtracted_count_table_all_Enterocytes_after_filt.txt" 8. Combine_Enterocytes_Obj.rds - Seurat Object for BG_subtracted_count_table_all_Enterocytes_after_filt.txt Folder Codes This folder contains unique codes used in the manuscript 1. segment_math_model.m - loads t_for_model 2. t_for_model