MorphoCellSorter is an Andrews plot-based sorting approach to rank microglia according to their morphological features

• DOI: 10.7554/elife.101630.3
• Publication Date: 2025-05-19T10:55:41Z
• Authors: Sarah Benkeder; Son-Michel Dinh; Paul Marchal; Priscille De Gea; Muriel Thoby-Brisson; Violaine Hubert; Ines Hristovska; Gabriel Pitollat; Kassandre Combet; Laura Cardoit; Bruno Pillot; Christelle Leon; Marlene Wiart; Serge Marthy; Jérôme Honnorat; Olivier Pascual; Jean-Christophe C...

Microglia exhibit diverse morphologies reflecting environmental conditions, maturity, or functional states. Thus, morphological characterization provides important information to understand microglial roles and functions. Most recent morphological analysis relies on classifying cells based on morphological parameters. However, this classification may lack biological relevance, as microglial morphologies represent a continuum rather than distinct, separate groups, and do not correspond to mathematically defined clusters irrelevant of microglial cells function. Instead, we propose a new open-source tool, MorphoCellSorter, which assesses microglial morphology by automatically computing morphological criteria, using principal component analysis and Andrews plots to score cells. MorphoCellSorter properly ranked cells from various microglia datasets in mice and rats of different ages, from in vivo, in vitro, and ex vivo models, that were acquired using diverse imaging techniques. This approach allowed for the discrimination of cell populations in various pathophysiological conditions. Finally, MorphoCellSorter offers a versatile, easy, and ready-to-use method to evaluate microglial morphological diversity that could easily be generalized to standardize practices across laboratories.