- Molecular Junctions and Nanostructures
- RNA modifications and cancer
- RNA and protein synthesis mechanisms
- Enzyme Structure and Function
- Photoreceptor and optogenetics research
- HIV Research and Treatment
- RNA Research and Splicing
- Photochromic and Fluorescence Chemistry
- Quantum Dots Synthesis And Properties
- Glycosylation and Glycoproteins Research
- Mass Spectrometry Techniques and Applications
- Protein Structure and Dynamics
- Bacterial Genetics and Biotechnology
- Microgrid Control and Optimization
- Bioinformatics and Genomic Networks
- Mechanical and Optical Resonators
- Ginkgo biloba and Cashew Applications
- Animal Virus Infections Studies
- Genomics and Chromatin Dynamics
- Engineering Applied Research
- Mechanical Engineering and Vibrations Research
- vaccines and immunoinformatics approaches
- RNA regulation and disease
- Phytochemicals and Antioxidant Activities
- Quantum Electrodynamics and Casimir Effect
Indian Institute of Science Bangalore
2005-2024
COMSATS University Islamabad
2023
Lovely Professional University
2022
University of Kashmir
2021
Islamic University of Science and Technology
2019
University of Gujrat
2019
Goethe University Frankfurt
2006-2016
European Molecular Biology Laboratory
2010-2016
European Molecular Biology Laboratory
2014
Chemistry of the Au-S interface at nanoscale is one most complex systems to study, as nature and strength bond change under different experimental conditions. In this using mechanically controlled break junction technique, we probed conductance analyzed Flicker noise for several aliphatic aromatic thiol derivatives thioethers. We demonstrate that can be used unambiguously differentiate between stronger chemisorption (Au-SR) weaker physisorption (Au-SRR') type interactions. The measurements...
Enhancing the electrical conductance through amorphous nondoped polymers is challenging. Here, we show that vibrational strong coupling (VSC) of intrinsically nonconducting and such as polystyrene, deuterated poly(benzyl methacrylate) to vacuum electromagnetic field cavity enhances conductivity by at least 6 orders magnitude compared uncoupled polymers. Remarkably, observed extraordinary mode selective occurs only under VSC aromatic C–H(D) out-of-plane bending modes The thermally activated...
By employing a mechanically controllable break junction technique, we have realized an ideal single molecular linear actuator based on dithienylethene (DTE) architecture, which undergoes reversible photothermal isomerization when subjected to UV irradiation under ambient conditions. As result, open form (compressed, OFF) and closed (elongated, ON) of dithienylethene-based junctions are achieved. Interestingly, the mechanical actuation is achieved without changing conductance around Fermi...
Abstract Ribosome recycling orchestrated by the ATP binding cassette (ABC) protein ABCE1 can be considered as final—or first—step within cyclic process of synthesis, connecting translation termination and mRNA surveillance with re-initiation. An ATP-dependent tweezer-like motion nucleotide-binding domains in transfers mechanical energy to ribosome tears subunits apart. The post-recycling complex (PRC) then re-initiates translation. Here, we probed so far unknown architecture 1-MDa PRC...
Single-chain derivatives of JRFL gp120 linked to the first two domains human CD4 (gp120-CD4D12) or miniprotein analog CD4M9 (gp120-M9), have been constructed. Biacore studies revealed that gp120-CD4D12 and gp120-M9 bound antibody 17b with dissociation constants 0.8 25 nM, respectively, at pH 7.0, while alone did not bind. The binding is affected by addition excess soluble CD4D12, enhanced. This finding indicates M9 component single chain interacts relatively weakly can be displaced CD4D12....
Gene silencing mediated by RNA interference requires the sequence-specific recognition of target mRNA endonuclease Argonaute, primary enzymatic component RNA-induced complex. We report crystal structure Aquifex aeolicus refined at 3.2A resolution. Relative to recent Argonaute structures, a 24 degrees reorientation PAZ domain in our opens basic cleft between N-terminal and domains, exposing guide strand binding pocket PAZ. This rearrangement leads branched, Y-shaped system grooves that...
Knowing the structure of multi-subunit complexes is critical to understand basic cellular functions. However, when crystals these can be obtained they rarely diffract beyond 3 Å resolution, which complicates X-ray determination and refinement. The crystal RNA polymerase I, an essential machine that synthesizes precursor ribosomal in nucleolus eukaryotic cells, has recently been solved. Here, crucial steps were undertaken build atomic model this enzyme are reported, emphasizing how simple...
CD4 is an important component of the immune system and also cellular receptor for HIV-1. consists a cytoplasmic tail, one transmembrane region, four extracellular domains, D1-D4. Constructs consisting all domains human as well first two (CD4D12) have previously been expressed characterized. All gp120-binding residues are located within N-terminal domain (D1) CD4. To date, it has not possible to obtain D1 alone in soluble active form. Most that interact with gp120 lie region 21-64 On basis...
Viral suppressors of RNA interference (RNAi) appear to have evolved as a response this innate genomic defense. We report the nucleic acid binding properties Cucumovirus RNAi suppressor tomato aspermy virus protein 2B (TAV 2B). Using total internal reflection fluorescence spectroscopy (TIRFS), we show that TAV binds double-stranded corresponding siRNAs and miRNAs, well single-stranded oligonucleotides. A number positively charged residues between amino acids 20 30 are critical for binding....
Diabetes mellitus (DM) is counted among one of the leading challenges in recent era, and it a life-threatening disorder. Compound 4-hydroxy 3-methoxy phenylacetone (compound 1) was previously isolated from Polygonum aviculare. This compound reacted with N-benzylmaleimide to synthesize targeted 3. The purpose this research exhibit our developed 3's ability concurrently inhibit many targets that are responsible for hyperglycemia. 3 capable inhibiting α-amylase, α-glucosidase, protein tyrosine...
Recent electron cryomicroscopy reconstructions have provided new insights into the overall organization of yeast RNA polymerase (Pol) III, responsible for synthesis small, non-translated RNAs. The structure free Pol III enzyme at 10 Å resolution provides an accurate framework to better understand its architecture and structural functional role two III-specific subcomplexes. Cryo-EM structures elongating bound DNA/RNA scaffolds show rearrangement subcomplexes that enclose incoming DNA. In one...
Abstract By employing a mechanically controllable break junction technique, we have realized an ideal single molecular linear actuator based on dithienylethene (DTE) architecture, which undergoes reversible photothermal isomerization when subjected to UV irradiation under ambient conditions. As result, open form (compressed, OFF) and closed (elongated, ON) of dithienylethene‐based junctions are achieved. Interestingly, the mechanical actuation is achieved without changing conductance around...
Single-molecule experiments offer a unique means to probe molecular properties of individual molecules–yet they rest upon the successful control background noise and irrelevant signals. In single-molecule transport studies, large amounts data that wide range physical chemical behaviors are often generated. However, due stochasticity these experiments, substantial fraction may consist blank traces where no signal is evident. One-class (OC) classification machine learning technique identify...
Achieving electrical conductance in amorphous non-doped polymers is a challenging task. Here, we show that vibrational strong coupling of the aromatic C-H(D) out-of-plane bending modes polystyrene, deuterated and poly (benzyl methacrylate) to vacuum electromagnetic field cavity enhance conductivity by at least six orders magnitude compared uncoupled polymers. The thermally activated onset coupling. It becomes temperature path length independent highest strengths, giving rise extraordinary...
Mastering the control of external stimuli-induced chemical transformations with detailed insights into mechanistic pathway is key for developing efficient synthetic strategies and designing functional molecular systems. Enzymes, most potent biological catalysts, efficiently utilize their built-in electric field to catalyze complex reactions within active site. Herein, we have demonstrated interfacial field-induced prototropic tautomerization reaction in acylhydrazone entities by creating an...
Photoswitchable molecules with structural flexibility can exhibit a complex ground state potential energy landscape due to the accessibility of multiple metastable states at merely low barriers. However, conventional bulk analytical techniques are limited in their ability probe these and relative energies. This is partially difficulty inducing changes small state, as they do not respond external stimuli, such mechanical force, unless incorporated into larger polymer networks. hinders...
Abstract In the modern power system, small scale versions of grid termed as Microgrid are being greatly used because practical, economic and environmental advantages over conventional structure. word itself suggests (micro-small grid-interconnection different elements) is advanced technology that currently endorsed for future systems in electrical engineering world. Transients produced microgrids due to fluctuating nature loads irregular behaviour renewable generation, particularly whenever...
Life relies on the accurate cascade of protein production from genomic code, DNA, via RNA. RNA polymerase I (Pol I) is one three types responsible for transcription DNA to It rRNA incorporated into Ribosome. Without extremely low error rate this synthesis process life would not have evolved beyond status bacteria and amoebae. The X-ray structures 14-subunit yeast [1,2] provide insight cornerstones in life. Altogether four different crystal at about 3 resolution are now available. biological...