A5080504478- Biomedical Text Mining and Ontologies
- Scientific Computing and Data Management
- Metabolomics and Mass Spectrometry Studies
- Bioinformatics and Genomic Networks
- Research Data Management Practices
- Microbial Metabolic Engineering and Bioproduction
- Advanced Proteomics Techniques and Applications
- Enzyme Catalysis and Immobilization
European Bioinformatics Institute
2017-2021
Wellcome Trust
2017
MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The cross-species cross-technique it covers metabolite structures reference spectra as well biological roles locations. the recommended repository number of leading journals ELIXIR, European infrastructure life science information. In this article, we describe significant updates that have made over last two years to resource respond increasing amount diversity being submitted by...
The Investigation/Study/Assay (ISA) Metadata Framework is an established and widely used set of open source community specifications software tools for enabling discovery, exchange, publication metadata from experiments in the life sciences. original ISA suite provided a user-facing Java creating manipulating information structured ISA-Tab-a now tabular format. To make framework more accessible to machines enable programmatic manipulation experiment metadata, JSON serialization ISA-JSON was...
Following similar global efforts to exchange genomic and other biomedical data, databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database metabolomics, has become fastest growing data repository at European Bioinformatics Institute terms of volume. Here we present automated assembly species metabolomes a crucial reference for chemical biology, which is through user submissions.
Abstract Background The Investigation/Study/Assay (ISA) Metadata Framework is an established and widely used set of open-source community specifications software tools for enabling discovery, exchange publication metadata from experiments in the life sciences. original ISA suite provided a user-facing Java creating manipulating information structured ISA-Tab – now tabular format. To make framework more accessible to machines enable programmatic manipulation experiment metadata, JSON...