A5060738603- Genetic Mapping and Diversity in Plants and Animals
- Genetic and phenotypic traits in livestock
- Bioenergy crop production and management
- Plant-Microbe Interactions and Immunity
- Microbial Natural Products and Biosynthesis
- Genomics and Phylogenetic Studies
- Genetic diversity and population structure
International Crops Research Institute for the Semi-Arid Tropics
2023
Wageningen University & Research
2022-2023
Pearl millet is a crucial nutrient-rich staple food in Asia and Africa adapted to the climate of semi-arid topics. Since genomic resources pearl are very limited, we have developed brand-new mid-density 4K SNP panel demonstrated its utility genetic studies. A set SNPs were mined from 925 whole-genome sequences through comprehensive in-silico pipeline. Three hundred seventy-three genetically diverse inbreds genotyped using newly-developed AgriSeq Targeted Genotyping by Sequencing technology....
Due to evolutionary divergence, sorghum race populations exhibit significant genetic and morphological variation. A k-mer-based sequence comparison identified the conserved k-mers of all 272 accessions from race-specific signatures gene variability in 10,321 genes (PAVs). To understand structure, diversity domestication, a deep learning-based variant calling approach was employed set genotypic data derived diverse panel accessions. The resulted 1.7 million high-quality genome-wide SNPs...
Abstract Due to evolutionary divergence, sorghum race populations exhibit vast genetic and morphological variations. A k-mer -based sequence comparison identified the conserved s of all accessions race-specific signatures gene variability in 10,321 genes (PAVs). To understand structure, diversity domestication, deep learning-based variant calling approach was employed a set genotypic data derived from diverse panel 272 accessions. The resulted 1.7 million high-quality genome-wide SNPs...
Abstract The complete genome sequence of one rare actinobacteria Amycolatopsis sp. BCA−696 was characterized in this study. previously reported as a biocontrol agent against charcoal rot sorghum and plant growth-promoting chickpea. next-generation sequencing based whole draft comprises ~ 9.05Mb circular chromosome with 68.75% GC content. In total, 8,716 protein-coding sequences 61 RNA-coding were predicted, the species-specific genomic features analysed. Here we also report produces...