Toni Sivula

ORCID: 0000-0002-1467-6189
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About
Contact & Profiles
Research Areas
  • Computational Drug Discovery Methods
  • Machine Learning in Materials Science
  • Chemical Synthesis and Analysis
  • Protein Structure and Dynamics
  • Cell Image Analysis Techniques
  • Metabolomics and Mass Spectrometry Studies
  • Enzyme function and inhibition
  • Biochemical and Molecular Research
  • ATP Synthase and ATPases Research

Finland University
2023

University of Eastern Finland
2023

University of Turku
1999

The emergence of ultra-large screening libraries, filled to the brim with billions readily available compounds, poses a growing challenge for docking-based virtual screening. Machine learning (ML)-boosted strategies like tool HASTEN combine rapid ML prediction brute-force docking small fractions such libraries increase throughput and take on giga-scale libraries. In our case study an anti-bacterial chaperone anti-viral kinase, we first generated baseline 1.56 billion compounds in Enamine...

10.1021/acs.jcim.3c01239 article EN cc-by Journal of Chemical Information and Modeling 2023-09-01

Based on the primary structure, soluble inorganic pyrophosphatases can be divided into two families which exhibit no sequence similarity to each other. Family I, comprising most of known pyrophosphatase sequences, further prokaryotic, plant and animal/fungal pyrophosphatases. Interestingly, bear a closer prokaryotic than Only 17 residues are conserved in all 37 family I remarkably, 15 these located at active site. Subunit interface but not

10.1016/s0014-5793(99)00779-6 article EN FEBS Letters 1999-07-02

The emergence of ultra-large screening libraries, filled to the brim with billions readily available compounds, poses a growing challenge for docking-based virtual screening. Machine Learning (ML)-boosted strategies like tool HASTEN combine rapid ML prediction brute-force docking small fractions such libraries increase throughput and take on giga-scale libraries. In our case study an anti-bacterial chaperone anti-viral kinase, we first generated baseline 1.56 billion compounds in Enamine...

10.26434/chemrxiv-2023-g34tx preprint EN cc-by 2023-02-10

The emergence of ultra-large screening libraries, filled to the brim with billions readily available compounds, poses a growing challenge for docking-based virtual screening. Machine Learning (ML)-boosted strategies like tool HASTEN combine rapid ML prediction brute-force docking small fractions such libraries increase throughput and take on giga-scale libraries. In our case study an anti-bacterial chaperone anti-viral kinase, we first generated baseline 1.56 billion compounds in Enamine...

10.26434/chemrxiv-2023-g34tx-v2 preprint EN cc-by 2023-08-07
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