Shahar Garin

ORCID: 0000-0002-1597-9069
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About
Contact & Profiles
Research Areas
  • RNA modifications and cancer
  • RNA and protein synthesis mechanisms
  • RNA Research and Splicing
  • Molecular Biology Techniques and Applications
  • Advanced Fluorescence Microscopy Techniques
  • Cell Image Analysis Techniques
  • Mitochondrial Function and Pathology

Weizmann Institute of Science
2025

Technion – Israel Institute of Technology
2019-2021

Analysis of single-molecule fluorescent in situ hybridization (smFISH) images is important to translate cellular image data into a quantifiable format. Although smFISH the gold standard for RNA localization measurements, there are no freely available, user-friendly applications assaying messenger (mRNA) organelles. EASI-ORC (Efficient and Segmentation Images Organelle-RNA Colocalization) novel pipeline automated analysis multiple yeast cells. automates segmentation cells organelles,...

10.1038/s42003-025-07682-z article EN cc-by-nc-nd Communications Biology 2025-02-15

Aminoacyl-tRNA synthetases (aaRSs) are a conserved family of enzymes with an essential role in protein synthesis: ligating amino acids to cognate tRNA molecules for translation. In addition their charging, aaRSs have acquired non-canonical functions, including post-transcriptional regulation mRNA expression. Yet, the extent and mechanisms these functions largely unknown. Herein, we performed comprehensive transcriptome analysis define mRNAs that associated almost all present

10.1080/15476286.2021.1935116 article EN RNA Biology 2021-05-27

Analysis of single-molecule fluorescent in situ hybridization (smFISH) images is an arduous and time-consuming task that important to perform accurately order translate image data into a quantifiable format. This becomes increasingly more difficult greater the experimental scope number captured. Although smFISH gold standard for RNA localization measurements, there are no freely available, user-friendly applications assaying messenger sub-cellular structures, like endoplasmic reticulum (ER)...

10.1101/2024.10.04.616601 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-10-04
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