Prachi Jain

ORCID: 0000-0002-3469-0754
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About
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Research Areas
  • Plant Disease Resistance and Genetics
  • Plant tissue culture and regeneration
  • Wheat and Barley Genetics and Pathology
  • Mycotoxins in Agriculture and Food
  • RNA modifications and cancer
  • Agricultural Economics and Practices
  • Chromosomal and Genetic Variations
  • Cancer-related molecular mechanisms research
  • Agricultural Innovations and Practices
  • Genomics and Phylogenetic Studies
  • Agricultural pest management studies
  • Plant-Microbe Interactions and Immunity
  • Plant Virus Research Studies
  • Peanut Plant Research Studies
  • Cancer-related gene regulation
  • RNA and protein synthesis mechanisms
  • Livestock Management and Performance Improvement
  • Phytochemicals and Medicinal Plants
  • Cancer-related Molecular Pathways
  • Fermentation and Sensory Analysis
  • Banana Cultivation and Research
  • Horticultural and Viticultural Research
  • Plant biochemistry and biosynthesis
  • Fungal and yeast genetics research
  • Pesticide Residue Analysis and Safety

National Research Centre on Plant Biotechnology
2024

Indian Council of Agricultural Research
2020-2024

Indian Agricultural Research Institute
2016-2022

National Research Centre for Grapes
2017-2020

Institute of Bioinformatics and Applied Biotechnology
2012-2016

Indira Gandhi National Open University
2014-2015

Biotech Park
2012-2015

Devi Ahilya Vishwavidyalaya
2007

Abstract Background The Azadirachta indica (neem) tree is a source of wide number natural products, including the potent biopesticide azadirachtin. In spite its widespread applications in agriculture and medicine, molecular aspects biosynthesis neem terpenoids remain largely unexplored. current report describes draft genome four transcriptomes A. attempts to contextualise sequence information terms phylogeny, transcript expression terpenoid pathways. first member family Meliaceae be...

10.1186/1471-2164-13-464 article EN cc-by BMC Genomics 2012-09-09

Marigold (Tagetes spp.) belongs to family Asteraceae, native Mexico, is one of the most important flower crop grown commercially in different parts India. The application haploid techniques as anther culture can considerably accelerate marigold breeding programmes by providing homozygous doubled (DH) lines for F1 hybrid seed production. Therefore, objective present investigation was study effect growth regulators vitro regeneration both African and French genotypes viz., Pusa Basanti Gainda...

10.56093/ijas.v88i6.80656 article EN cc-by-nc-sa The Indian Journal of Agricultural Sciences 2024-05-27

Groundnut (Arachis hypogaea L.) is an important oil seed crop being adversely affected by foliar fungal disease viz., late leaf spot. The objective of this study to identify genotypes with high yield and component traits along resistance spot (LLS). Based on the per se performance, TCGS-2485, TCGS-2493, TCGS-2498, TCGS-2501, TCGS-2500, TCGS-2528, TCGS-2486, TCGS-2520, TCGS-2502 TCGS-2519 were found be promising these could further utilized as parents for improvement its related characters in...

10.9734/jsrr/2025/v31i32879 article EN Journal of Scientific Research and Reports 2025-03-11

Abstract Neem (Azadirachta indica A. Juss.), an evergreen tree of the Meliaceae family, is known for its medicinal, cosmetic, pesticidal and insecticidal properties. We had previously sequenced published draft genome a neem plant, using mainly short read sequencing data. In this report, we present improved assembly generated additional reads from Illumina long Pacific Biosciences SMRT sequencer. assembled error-corrected Platanus, assembler designed to perform well heterozygous genomes. The...

10.1534/g3.116.030056 article EN cc-by G3 Genes Genomes Genetics 2016-07-01

<ns4:p>Oral tongue squamous cell carcinomas (OTSCC) are a homogeneous group of tumors characterized by aggressive behavior, early spread to lymph nodes and higher rate regional failure. Additionally, the incidence OTSCC among younger population (&lt;50yrs) is on rise; many whom lack typical associated risk factors alcohol and/or tobacco exposure. We present data single nucleotide variations (SNVs), indels, regions with loss heterozygosity (LOH), copy number (CNVs) from fifty-paired oral...

10.12688/f1000research.7302.1 preprint EN cc-by F1000Research 2015-11-05

Abstract Gliovirin is a strong anti‐oomycete and candidate anticancer compound. It produced by “P” strains of the plant disease biocontrol fungus Trichoderma virens involved in biological control certain pathogens. Even though compound known for more than three decades, neither genes nor biosynthetic pathway are known. We have sequenced whole genome gliovirin producing strain T. discovered novel gene cluster comprising 22 genes. Disruption non‐ribosomal peptide synthetase eliminated...

10.1002/slct.201700262 article EN ChemistrySelect 2017-04-13

Laryngo-pharyngeal squamous cell carcinomas are one of the most common head and neck cancers.Despite presence a large body information, molecular biomarkers not currently used in diagnosis, treatment management patients for this group cancer.Here, we have profiled expression genes microRNAs larynx hypopharynx tumors using high-throughput sequencing experiments.We found that matrix metalloproteinases along with SCEL, CRNN, KRT4, SPINK5, TGM3 among others significantly altered these...

10.18632/genesandcancer.69 article EN Genes & Cancer 2015-06-10

Researchers interested in studying and constructing transcriptomes, especially for non-model species, face the conundrum of choosing from a number available de novo genome-guided assemblers. None popular assembly tools use today achieve requisite sensitivity, specificity or recovery full-length transcripts on their own. Here, we present comprehensive comparative study performance various Additionally, an approach to combinatorially augment transciptome by using both tools. In our study,...

10.7717/peerj.133 article EN cc-by PeerJ 2013-08-15

Abstract Fast‐growing callus, cell suspension and root cultures of Vernonia cinerea , a medicinal plant, were analyzed for the presence alkaloids. Callus established from young leaf explants in Murashige Skoog (MS) basal media supplemented with combinations auxins cytokinins, whereas callus cultures. Maximum biomass obtained medium 1 mg/L α‐naphthaleneacetic acid (NAA) 5 benzylaminopurine (BA), 1.0 NAA 0.1 BA 1.5 NAA, respectively. The 5‐week‐old resulted maximum alkaloid contents (750...

10.1002/biot.200700033 article EN Biotechnology Journal 2007-06-21

The present study was conducted in Chittoor district of Andhra Pradesh to know the impact Farmer Field School(FFS) on extent adoption ofimproved practices by groundnutfarmers. sample consisted oftwo groups participants and non-participants(120 each group) making a totalsample size 240 farmers. followed expost-facto research method. resultsrevealed that half participant farmers were medium category high low categories whereas, lessthan (45.83%) non-participant categories, respectively....

10.56739/jor.v32i1.142067 article EN Journal of Oilseeds Research 2015-07-30

Abstract Background: Spot blotch disease of wheat caused by Bipolaris sorokiniana Boerma (Sacc.) is an emerging problem in South Asian countries. In this study, whole genome highly virulent isolate (BS112) was sequenced, pathogenicity related gene(s) were identified and role ToxA gene spot development established. Results: BS112 infecting sequenced using hybrid assembly approach. The size the 35.64Mb (GenBank accession number RCTM00000000) with GC content 50.2%, providing coverage 97.6% on...

10.21203/rs.3.rs-677095/v1 preprint EN cc-by Research Square (Research Square) 2021-08-30

Marigold (Tagetes erecta L.) is one of the farmer’s first choice for commercial cultivation. It commonly propagated through seeds, but some ornamentally high valued petaloid and gynomonoecious lines can only be maintained vegetative propagation. Therefore, objective present investigation was to develop efficient in vitro protocol mass multiplication commercially male sterile cultivars. Nodal segments were chosen as explant from two thermotolerant marigold cultivars, viz. Siracole Orange...

10.56093/ijas.v87i10.74827 article EN cc-by-nc-sa The Indian Journal of Agricultural Sciences 2017-10-13

Groundnut is an important oilseed crop in Karimnagar district, Telangana state. The KVK, has disseminated improved groundnut production technologies to the farmers of district through village adoption, technology assessment, refinement, demonstrations and farmer field schools. Further, KVK used various modes communication such as electronic print media for popularization technologies. An impact assessment was done 15 adopted villages with 60 non-adopted 30 assess increase knowledge adoption...

10.56739/jor.v33i4.137869 article EN Journal of Oilseeds Research 2016-12-30

Abstract Neem ( Azadirachta indica A. Juss.), an evergreen tree of the Meliaceae family, is known for its medicinal, cosmetic, pesticidal and insecticidal properties. We had previously sequenced published draft genome plant, using mainly short read sequencing data. In this report, we present improved assembly generated additional reads from Illumina long Pacific Biosciences SMRT sequencer. assembled error-corrected Platanus, assembler designed to perform well heterozygous genomes. The...

10.1101/033290 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2015-11-30

Abstract Oral tongue squamous cell carcinomas (OTSCC) are a homogenous group of tumors characterized by aggressive behavior, early spread to lymph nodes and higher rate regional failure. Additionally, the incidence OTSCC among younger population (&lt;50yrs) is on rise; many who lack typical associated risk factors alcohol and/or tobacco exposure. We present data SNVs, indels, regions with LOH, CNVs from fifty-paired oral primary link significant somatic variants clinical parameters,...

10.1101/028845 preprint EN cc-by-nc bioRxiv (Cold Spring Harbor Laboratory) 2015-10-11

The personal, socioeconomic and psychological characteristics play a vital role in planning any capacity building programmes to farmers. A study was conducted during 2012-13 know the of Farmer Field School (FFS) non-FFS farmers groundnut Chittoor district Andhra Pradesh. There no significant difference farming experience status observed between FFS groundnut. Significant differences extension participation, mass media exposure, innovativeness, achievement motivation, management orientation,...

10.56739/jor.v31i1.142119 article EN Journal of Oilseeds Research 2014-07-21
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