A5080315647- Agricultural Science and Fertilization
- Crop Yield and Soil Fertility
- Plant Micronutrient Interactions and Effects
- Plant Disease Resistance and Genetics
- Rice Cultivation and Yield Improvement
- Plant Pathogens and Resistance
- Microbial Community Ecology and Physiology
- Plant Pathogens and Fungal Diseases
- Plant Growth Enhancement Techniques
- Genomics and Phylogenetic Studies
- Environmental DNA in Biodiversity Studies
- Agricultural Economics and Practices
- Plant Physiology and Cultivation Studies
- Plant Virus Research Studies
- Sunflower and Safflower Cultivation
- Plant-Microbe Interactions and Immunity
- Biodiesel Production and Applications
- Soil Carbon and Nitrogen Dynamics
- Plant Pathogenic Bacteria Studies
- Chromosomal and Genetic Variations
- Plant Disease Management Techniques
- Agricultural Practices and Plant Genetics
- Genetics and Plant Breeding
- Plant responses to elevated CO2
- Sugarcane Cultivation and Processing
University of Padua
2019-2024
University of Agricultural Sciences Raichur
2017-2024
Indian Council of Agricultural Research
2023-2024
Kerala Agricultural University
2021
Institute of Bioinformatics and Applied Biotechnology
2018-2020
Biotech Park
2018-2020
Kanchi Mamunivar Centre for Post Graduate Studies
2018
Sri Ramachandra Institute of Higher Education and Research
2014
This work aimed to study the effects in tomato ( Solanum lycopersicum L.) of foliar applications a novel calcium-based biostimulant (SOB01) using an omics approach involving transcriptomics and physiological profiling. A calcium-chloride fertilizer (SOB02) was used as product reference standard. Plants were grown under well-watered (WW) water stress (WS) conditions growth chamber. We firstly compared transcriptome profile treated untreated plants software RStudio. Totally, 968 1,657...
Late blight, caused by oomycetes Phytophthora infestans is one of the most challenging fungal diseases to manage in tomato plants (Solanum lycopersicum L.). Toward managing disease, conventional breeding has successfully introgressed genetic loci conferring disease resistance from various wild relatives into commercial varieties. The cataloging disease-associated SNP markers and a deeper understanding disease-resistance mechanisms are needed keep up with demand for varieties resistant...
Abstract Background Lagoons are important natural systems, with attractive favorable conditions for aquaculture production, such as shellfish cultivation. Despite their socio-economic relevance human activity, information on the microbial diversity, community composition, and putative functions of gill-associated microbiota seawater is still limited, particularly regards extent specific taxa enrichment within gills relative effects temporal spatial variables. In this study, we used a 16S...
A survey was conducted in the Bellary district Northern Dry Zone of Karnataka (zone-3). Only those farmers who had been practicing it for more than five years were selected and information on type quantity organics used by them different cropping systems viz., Groundnut, Ragi, Onion, Drumstick Maize collected, Soil samples from 30 organic farms neighboring conventional under same system also collected. The results revealed that farming approaches enhance chemical composition soil, augment...
The molecular and phenotypic effects of a brown seaweed extract (BSE) were assessed in sugar beet (Beta vulgaris L.). Transcript levels BSE-treated untreated plants studied by RNA-seq validated quantitative real-time PCR analysis (RT-qPCR). Root morphology, yield, processing quality traits also analyzed to better elucidate the treatment effects. revealed 1019 differentially expressed genes (DEGs) between plants. An adjusted p-value < 0.1 an absolute value log2 (fold change) greater than one...
Malaria remains a major healthcare risk to growing economies like India and chromosome-level reference genome of Anopheles stephensi is critical for successful vector management understanding evolution using comparative genomics. We report assemblies an Indian strain, STE2, Pakistani strain SDA-500 by combining draft genomes the two strains homology-based iterative approach. The resulting assembly IndV3/PakV3 with L50 9/12 N50 6.3/6.9 Mb respectively, had scaffolds long enough building 90%...
Rhizoctonia solani, causing crown and root rot, is a major risk to sugar beet (Beta vulgaris L.) cultivation. The development of resistant varieties accelerated by marker-assisted selection priority breeding programs. We report the identification single-nucleotide polymorphism (SNP) marker linked resistance using restriction site-associated DNA (RAD) sequencing two geographically discrete sets plant materials with different degrees resistance/susceptibility enable wider superior genotypes....
The present study aimed to explore the effects of foliar application a leonardite-based product on sugar beet (Beta vulgaris L.) plants grown in field. approach concerned evaluation community compositional structure plant endophytic bacteria through metabarcoding approach, expression level gene panel related hormonal metabolism and signaling, main productivity traits. Results indicated that treated with leonardite (dosage 2,000 ml ha-1, dilution 1:125, 4 mg C l-1) compared untreated ones had...
The identification of efficient molecular markers related to low bolting tendency is a priority in sugar beet ( Beta vulgaris L.) breeding. This study aimed identify SNP associated with by establishing genome-wide association study. An elaborate 3-year field trial comprising 13 lines identified L14 as the one exhibiting lowest along an increased survival rate after autumnal sowing. For discovery following phenotyping, contrasting phenotypes 24 non-bolting and 15 plants line were sequenced...
The microbial diversity is, among soil key factors, responsible for fertility and nutrient biogeochemical cycles, can be modified upon changes in main physicochemical properties pollution. Over the years, many restoration techniques have been applied to restore degraded soils. However, effect of these approaches on is less understood thus requires more investigation. In this study, we analyzed impact, a patented novel technology, used Soil samples were collected from three nearby sites...
A comprehensive approach using phenomics and global transcriptomics for dissecting plant response to biostimulants is illustrated with tomato (Solanum lycopersicum cv. Micro-Tom Rio Grande) plants cultivated in the laboratory, greenhouse, open field conditions. Biostimulant treatment based on an Ascophyllum nodosum extract (ANE) was applied as a foliar spray two doses (1 or 2 l ha-1) at three different phenological stages (BBCH51, BBCH61, BBCH65) during flowering phase. Both ANE resulted...
A large number of congenital disorders are very rare and localized to rural areas in India, a country that practices both endogamy consanguinity. Recent advances genomics can aid the identification causative genomic elements when exploring therapeutic interventions developing neonatal screening assign novel functions. Here, we report loss-of-function mutation (p.Trp370*) HACE1 gene is associated with neurodevelopmental disorder boy from remote village southern India.
Abstract Edible/non-toxic varieties of Jatropha curcas L. are gaining increasing attention, providing both oil as biofuel feedstock or even edible and the seed kernel meal animal feed ingredient. They a viable alternative to limitation posed by presence phorbol esters in toxic varieties. Accurate genotyping toxic/non-toxic accessions is critical breeding management. The aim this study was identify SNP markers linked toxicity J. . For discovery, NGS technology used sequence whole genomes...
Field experiment was conducted using thirty two rice genotypes during the Kharif season of 2009 at wetland farm S.V Agricultural College, Tirupati to estimate correlation coefficients and path analysis for grain yield contributing traits in rice. The experiments were laid down a randomized complete block design with three replications. Highly significant (p<0.01) variation obtained almost all characters studied. Character association revealed significantly positive per plant harvest index,...
Abstract Ionome contributes to maintain cell integrity and acts as cofactors for catalyzing regulatory pathways. Identifying ionome contributing genomic regions provides a practical framework dissect the genetic architecture of ionomic traits use in biofortification. Meta-QTL (MQTL) analysis is robust method discover stable regardless background. This study used information 483 QTLs identified from 12 populations MQTL Arabidopsis thaliana . The selected were projected onto newly constructed...
In the age of genomics-based crop improvement, a high-quality genome local landrace adapted to environmental conditions is critically important. Grain amaranths produce highly nutritional grains with multitude desirable properties including C4 photosynthesis sought-after in other crops. For improving agronomic traits grain amaranth and for transfer dicot crops, reference necessary. Towards this end, our lab had initiated sequencing Amaranthus (A.) hypochondriacus (A.hyp_K_white) reported...
Sulfur is an essential plant macronutrient, and its adequate supply allows efficient root storage sugar extractability in beets (Beta vulgaris L.). In this study, we investigated the effect of changes sulfur availability on endophytic community structure beets. Plants were hydroponically grown a complete nutrient solution (S-supplied), without MgSO4 (S-deprived), for six days resupplied with 100 μM 48 h (S-resupplied). The status was monitored by inductively coupled plasma ICP–OES,...
The characterization of genetic diversity in elite breeding stocks is crucial for the registration and protection new varieties. Moreover, experimental population structure analysis information about distinctiveness commercial materials are essential crop programs. purpose our research was to assess relationships 32 endive (Cichorium endivia L.) lines, 18 from var. latifolium (escarole) 14 crispum (curly), using heterologous Cichorium intybus-derived simple sequence repeats (SSR) markers...
// Pushpinder Singh Bawa 1, 2, , Samathmika Ravi 1 Swagatika Paul Bibha Chaudhary and Subhashini Srinivasan Institute of Bioinformatics Applied Biotechnology, Biotech Park, Electronic City Phase I, Bangalore, India 2 Manipal University, Manipal, Karnataka, Correspondence to: Srinivasan, email: ssubha@ibab.ac.in Keywords: lncRNA; PCAT92; prostate cancer; ABCC4; ZIC2 Received: January 24, 2017 Accepted: July 18, 2018 Published: August 21, 2018...