Benjamin M. Stormo

ORCID: 0000-0002-6861-8451
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About
Contact & Profiles
Research Areas
  • RNA Research and Splicing
  • Microtubule and mitosis dynamics
  • Genomics and Chromatin Dynamics
  • RNA and protein synthesis mechanisms
  • Fungal and yeast genetics research
  • Chromosomal and Genetic Variations
  • RNA modifications and cancer
  • Cellular transport and secretion
  • Plant-Microbe Interactions and Immunity
  • Yeasts and Rust Fungi Studies
  • Protist diversity and phylogeny
  • Photosynthetic Processes and Mechanisms
  • Genomic variations and chromosomal abnormalities
  • Cellular Mechanics and Interactions
  • Pluripotent Stem Cells Research
  • European Socioeconomic and Political Studies
  • Post-Communist Economic and Political Transition
  • Erythrocyte Function and Pathophysiology
  • Retinal Development and Disorders
  • Reproductive Biology and Fertility
  • Biocrusts and Microbial Ecology
  • Heat shock proteins research
  • Renaissance Literature and Culture
  • Connexins and lens biology
  • thermodynamics and calorimetric analyses

Duke University
2016-2024

Duke Medical Center
2016-2023

Duke University Hospital
2016-2023

University of North Carolina at Chapel Hill
2019-2022

Bowdoin College
2008

SignificanceA large subclass of biomolecular condensates are linked to RNA regulation and known as ribonucleoprotein (RNP) bodies. While extensive work has identified driving forces for condensate formation, relatively little is about that oppose assembly. Here, using a fungal RNP protein, Whi3, we show portion its intrinsically disordered, glutamine-rich region modulates phase separation by forming transient alpha helical structures promote the assembly dilute oligomers. These oligomers...

10.1073/pnas.2120799119 article EN cc-by-nc-nd Proceedings of the National Academy of Sciences 2022-03-25

Duplicating chromosomes once each cell cycle produces sister chromatid pairs, which separate accurately at anaphase. In contrast, reduplicating without separation frequently polytene chromosomes, a barrier to accurate mitosis. Chromosome reduplication occurs in many contexts, including: tissue development, tumors, and following treatment with mitosis-blocking chemotherapeutics. However, mechanisms responding or resolving polyteny during mitosis are poorly understood. Here, using Drosophila,...

10.7554/elife.15204 article EN cc-by eLife 2016-05-09

Abstract Most amino acids are encoded by multiple codons, making the genetic code degenerate. Synonymous mutations affect protein translation and folding, but their impact on RNA itself is often neglected. We developed a algorithm that introduces synonymous to control diversity of structures sampled an mRNA. The behavior designed mRNAs reveals physical layered in code. find mRNA conformational heterogeneity directs properties functional outputs RNA-protein complexes biomolecular condensates....

10.1101/2024.12.11.627970 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2024-12-12

To ensure faithful genome propagation, mitotic cells alternate one round of chromosome duplication with separation. Chromosome separation failure thus causes reduplication, which alters structure. Such structural alterations are well documented to impair fidelity following aberrant including in diseased states. In contrast, we recently showed that naturally occurring reduplication does not alter structure Drosophila papillar cells. Our discovery raised the question how a cell undergoing...

10.1091/mbc.e17-10-0582 article EN cc-by-nc-sa Molecular Biology of the Cell 2018-11-21

Multiple nuclei sharing a common cytoplasm are found in diverse tissues, organisms, and diseases. Yet, multinucleation remains poorly understood biological property. Cytoplasm invariably involves plasma membrane breaches. In contrast, we discovered without breaching highly resorptive Drosophila rectal papillae. During six-hour developmental window, 100 individual papillar cells assemble multinucleate cytoplasm, allowing passage of proteins at least 62 kDa throughout tissue. Papillar does not...

10.7554/elife.58107 article EN cc-by eLife 2020-10-14

Plant-derived phenolic compounds such as those found in red wine, tea, and certain fruit juices may protect against cardiovascular disease by detoxifying (scavenging) superoxide other unstable reactive oxygen species. We present a laboratory exercise that can be used to assess the superoxide-scavenging capacity of beverages. Among beverages examined, only known rich (red green blueberry juice, stout beer) exhibited appreciable scavenging. White wine 10% ethanol solution served controls did...

10.1002/bmb.20140 article EN Biochemistry and Molecular Biology Education 2008-01-01

Abstract Ribonucleoprotein bodies are exemplars of membraneless biomolecular condensates that can form via spontaneous or driven phase transitions. The fungal protein Whi3 forms ribonucleoprotein with different RNA molecules, and these implicated in key processes such as cell-cycle control generating cell polarity. has a modular architecture includes Q-rich intrinsically disordered region (IDR) tandem recognition module. Here, we demonstrate 21-residue stretch within the IDR weak intrinsic...

10.1101/2021.04.19.440511 preprint EN cc-by-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-04-20

ABSTRACT Duplicating chromosomes once each cell cycle produces sister chromatid pairs, which separate accurately at anaphase. In contrast, reduplicating without separation frequently polytene chromosomes, a barrier to accurate mitosis. Chromosome reduplication occurs in many contexts, including: tissue development, tumors, and following treatment with mitosis-blocking chemotherapeutics. However, mechanisms responding or resolving polyteny during mitosis are poorly understood. Here, using...

10.1101/045781 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2016-03-25

Abstract Fungi have been found in every marine habitat that has explored, however, the diversity and functions of fungi ocean are poorly understood. In this study, were cultured from environment vicinity Woods Hole, MA, USA including plankton, sponge coral. Our sampling resulted 36 unique species across 20 genera. We observed many isolates by time-lapse differential interference contrast (DIC) microscopy analyzed modes growth division. Several black yeasts displayed highly unconventional...

10.1101/657254 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2019-06-02

Temperature can impact every reaction and molecular interaction essential to a cell. For organisms that cannot regulate their own temperature, major challenge is how adapt temperatures fluctuate unpredictability on variable timescales. Biomolecular condensation offers possible mechanism for encoding temperature-responsiveness robustness into cell biochemistry organization. To explore this idea, we examined temperature adaptation in filamentous-growing fungus called Ashbya gossypii engages...

10.1101/2023.11.27.568884 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-11-27

Temperature can impact every reaction and molecular interaction essential to a cell. For organisms that cannot regulate their own temperature, major challenge is how adapt temperatures fluctuate unpredictability on variable timescales. Biomolecular condensation offers possible mechanism for encoding temperature-responsiveness robustness into cell biochemistry organization. To explore this idea, we examined temperature adaptation in filamentous-growing fungus called Ashbya gossypii engages...

10.2139/ssrn.4645884 preprint EN 2023-01-01

ABSTRACT Multiple nuclei sharing a common cytoplasm are found in diverse tissues, organisms, and diseases. Yet, multinucleation remains poorly understood biological property. Cytoplasm invariably involves plasma membrane breaches. In contrast, we discovered without breaching highly resorptive Drosophila rectal papillae. During six-hour developmental window, 100 individual papillar cells assemble multinucleate cytoplasm, allowing passage of proteins at least 27kDa throughout tissue. Papillar...

10.1101/2020.02.22.960187 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2020-02-22

Abstract RNA-binding proteins are frequently seen to be capable of auto-regulation by binding their own transcripts. In this work, we show that in the multinucleated fungus Ashbya gossypii , phase-separating protein Whi3 binds and regulates its transcripts distinct condensates from other targets. Failure bind transcript leads a reduction level inability properly regulate targets, leading defects nuclear cycling, polarized growth, transcription START-regulated genes. These results present...

10.1101/2021.04.25.441362 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2021-04-26
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