A5012188831- Biomedical Text Mining and Ontologies
- Bioinformatics and Genomic Networks
- Species Distribution and Climate Change
- Genomics and Phylogenetic Studies
- Ecology and Vegetation Dynamics Studies
- Data Visualization and Analytics
- Spider Taxonomy and Behavior Studies
- Environmental and Biological Research in Conflict Zones
- Complex Network Analysis Techniques
- Subterranean biodiversity and taxonomy
- Orthoptera Research and Taxonomy
- Microbial Community Ecology and Physiology
- Plant and animal studies
- Coastal and Marine Management
- Coral and Marine Ecosystems Studies
- Machine Learning in Bioinformatics
- Marine Biology and Ecology Research
- Marine Biology and Environmental Chemistry
- Microplastics and Plastic Pollution
- Computational Drug Discovery Methods
- Gene expression and cancer classification
- Seismology and Earthquake Studies
University of Crete
2021-2024
Senologic Hellenic Society
2023
Natural History Museum
2023
Institute of Biodiversity and Ecosystem Research
2023
Democritus University of Thrace
2023
Hellenic Centre for Marine Research
2021-2022
Abstract High-performance computing (HPC) systems have become indispensable for modern marine research, providing support to an increasing number and diversity of users. Pairing with the impetus offered by high-throughput methods key areas such as non-model organism studies, their operation continuously evolves meet corresponding computational challenges. Here, we present a Tier 2 (regional) HPC facility, operating over decade at Institute Marine Biology, Biotechnology, Aquaculture Hellenic...
To elucidate ecosystem functioning, it is fundamental to recognize what processes occur in which environments (where) and microorganisms carry them out (who). Here, we present PREGO, a one-stop-shop knowledge base providing such associations. PREGO combines text mining data integration techniques mine what-where-who associations from metadata scattered the scientific literature public omics repositories. Microorganisms, biological processes, environment types are identified mapped ontology...
Abstract Extracting and processing information from documents is of great importance as lots experimental results findings are stored in local files. Therefore, extracting analyzing biomedical terms such files an automated way absolutely necessary. In this article, we present OnTheFly2.0, a web application for entities individual plain texts, office documents, PDF or images. OnTheFly2.0 can generate informative summaries popup windows containing knowledge related to the identified along with...
Abstract Arena3Dweb is an interactive web tool that visualizes multi-layered networks in 3D space. In this update, supports directed as well up to nine different types of connections between pairs nodes with the use Bézier curves. It comes color schemes (light/gray/dark mode), custom channel coloring, four node clustering algorithms which one can run on-the-fly, visualization VR mode and predefined layer layouts (zig-zag, star cube). This update also includes enhanced navigation controls...
ABSTRACT Extracting and processing information from documents is of great importance as lots experimental results findings are stored in local files. Therefore, extracting analysing biomedical terms such files an automated way absolutely necessary. In this article, we present OnTheFly 2.0 , a web application for entities individual plain texts, Office documents, PDF or images. can generate informative summaries popup windows containing knowledge related to the identified along with links...
ABSTRACT Arena3D web is an interactive tool that visualizes multi-layered networks in 3D space. In this update, supports directed as well up to nine different types of connections between pairs nodes with the use Bézier curves. It comes color schemes (light/gray/dark mode), custom channel coloring, four node clustering algorithms which one can run on-the-fly, visualization VR mode and predefined layer layouts (zig-zag, star cube). This update also includes enhanced navigation controls (mouse...
Historical biodiversity documents comprise an important link to the long-term data life cycle and provide useful insights on several aspects of research management. However, because their historical context, they present specific challenges, primarily time- effort-consuming in curation. The rescue process requires a multidisciplinary effort involving four tasks: (a) Document digitisation (b) Transcription, which involves text recognition correction, (c) Information Extraction, is performed...
<title>Abstract</title> Arthropods' decline has been documented in global and local studies, yet they are still not sufficiently protected on a scale. Crete (Greece), Mediterranean hotspot is continental island, renowned for its diverse geology, ecosystems endemicity of flora fauna, with many studies all the above disciplines dating back to 19th century. Here we investigate conservation status Cretan Arthropods using Preliminary Automated Conservation Assessments (PACA) overlap Arthropod...
Within the framework of project “Conservation Cave Fauna Greece”, Hellenic Institute Speleological Research developed Greece (CFG) Database (https://database.inspee.gr/, Fig. 1), a free online data infrastructure that provides reliable information on taxonomy, distribution, conservation status and referenced literature for all cavernicolous animal species in Greece. Furthermore, it geography, protection fauna each cave, as well literature. The database was compiled after gathering,...
Located in the southernmost of Aegean Sea, Crete is largest Greek islands covering an area 8,261 km 2 . The first records on cave fauna were published 1869 and since then a total 175 publications have been gradually increased our knowledge cave-dwelling species island. currently best-studied Region Greece regarding biospeleology. Although it covers only 6.3% national area, faunistically investigated caves represent 35% while recorded includes 30% cavernicolous Greece. In total, 250 belonging...