Nicholas A. Borja

ORCID: 0000-0002-9199-9096
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About
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Research Areas
  • Genetic factors in colorectal cancer
  • Multiple and Secondary Primary Cancers
  • BRCA gene mutations in cancer
  • Genomics and Rare Diseases
  • Genetics and Neurodevelopmental Disorders
  • Genomic variations and chromosomal abnormalities
  • Cancer Genomics and Diagnostics
  • Cancer and Skin Lesions
  • Epigenetics and DNA Methylation
  • Colorectal Cancer Surgical Treatments
  • Colorectal and Anal Carcinomas
  • Tumors and Oncological Cases
  • Hedgehog Signaling Pathway Studies
  • RNA regulation and disease
  • Cancer Mechanisms and Therapy
  • Cancer Risks and Factors
  • Lipid metabolism and biosynthesis
  • Healthcare Systems and Technology
  • Metastasis and carcinoma case studies
  • Pancreatic and Hepatic Oncology Research
  • Health, Environment, Cognitive Aging
  • Data-Driven Disease Surveillance
  • RNA Research and Splicing
  • Congenital heart defects research
  • Clinical practice guidelines implementation

Dr. John T. Macdonald Foundation
2022-2025

University of Miami
2022-2025

Jackson Memorial Hospital
2024

The University of Texas Southwestern Medical Center
2015-2016

Southwestern Medical Center
2015

Abstract The occurrence of multiple primary cancers (MPC) is thought to reflect increased cancer susceptibility in patients due a combination genetic and environmental factors. Here we conducted retrospective review 2,894 consecutive evaluated at single institution identified 31 (1.14%) individuals with history three or more cancers, then analyzed the influences associated their propensity for developing malignancies. We found that 35.5% had hereditary syndrome (HCS), high penetrance HCS...

10.1158/1940-6207.capr-23-0395 article EN Cancer Prevention Research 2024-02-15

// Agnieszka K. Witkiewicz 1,2 , Nicholas A. Borja 3 Jorge Franco 1 Jonathan R. Brody 4 Charles J. Yeo 5 John Mansour 2,3 Michael Choti Peter McCue and Erik S. Knudsen Department of Pathology, UT Southwestern Medical Center, Dallas, TX, USA 2 Simmons Cancer Surgery, Thomas Jefferson University, Philadelphia, PA, Correspondence to: Witkiewicz, email: Knudsen, Keywords : CDK4/6, pancreatic cancer, PD-0332991, patient-derived xenograft, tumor explant Received February 05, 2015 Accepted March...

10.18632/oncotarget.3819 article EN Oncotarget 2015-04-14

Abstract Bryant-Li-Bhoj syndrome (BLBS), which became OMIM-classified in 2022 (OMIM: 619720, 619721), is caused by germline variants the two genes that encode histone H3.3 ( H3-3A / H3F3A and H3-3B H3F3B ) [1–4]. This characterized developmental delay/intellectual disability, craniofacial anomalies, hyper/hypotonia, abnormal neuroimaging [1, 5]. BLBS was initially categorized as a progressive neurodegenerative de novo heterozygous either or Here, we analyze data of 58 previously published...

10.1038/s41431-024-01610-1 article EN cc-by European Journal of Human Genetics 2024-04-27
Lane Fitzsimmons Maria T. Acosta David R. Adams Ben Afzali Ali Al-Beshri and 95 more Eric J. Allenspach Aimee Allworth Raquel L. Alvarez Mahshid S. Azamian Ashley Andrews Euan A. Ashley Carlos A. Bacino Güney Bademci Ashok Balasubramanyam Dustin Baldridge Erin Baldwin Jim Bale Michael Bamshad Deborah Barbouth Pinar Bayrak‐Toydemir Anita Beck Alan H. Beggs Edward M. Behrens Gill Bejerano Hugo J. Bellen Jimmy Bennett Jonathan A. Bernstein Gerard T. Berry Anna Bican Stephanie Bivona Elizabeth Blue John Bohnsack Devon Bonner Nicholas A. Borja Lorenzo Botto Lauren C. Briere Elizabeth A. Burke Lindsay C. Burrage Manish J. Butte Peter H. Byers William E. Byrd Kaitlin Callaway John M. Carey George Carvalho Thomas Cassini Sirisak Chanprasert Hsiao‐Tuan Chao Iván K. Chinn Gary Clark Terra R. Coakley Laurel A. Cobban Joy D. Cogan Matthew Coggins F. Sessions Cole Brian Corner Rosario I. Corona William J. Craigen Andrew B. Crouse Vishnu Anand Cuddapah Precilla D’Souza Hongzheng Dai Kahlen Darr Surendra Dasari Joie Davis Margaret Delgado Esteban C. Dell’Angelica Katrina M. Dipple Daniel Doherty Naghmeh Dorrani Jessica Douglas Emilie D. Douine Dawn Earl Lisa Emrick Christine M. Eng Cecilia Esteves Kimberly Ezell Elizabeth L. Fieg Paul G. Fisher Brent L. Fogel Jiayu Fu William A. Gahl Rebecca Ganetzky Emily Glanton Ian A. Glass Pagé C. Goddard Joanna M. Gonzalez Andrea Gropman Meghan C. Halley Rizwan Hamid Neal Hanchard Kelly Hassey Nichole Hayes Frances High Anne Hing Fuki M. Hisama Ingrid A. Holm Jason Hom Martha Horike‐Pyne Alden Huang Yan Huang

The mechanistic pathways that give rise to the extreme symptoms exhibited by rare disease patients are complex, heterogeneous, and difficult discern. Understanding these mechanisms is critical for developing treatments address underlying causes of diseases rather than merely presenting symptoms. Moreover, same dysfunctional series interrelated implicated in recessive may also lead milder potentially preventable carriers general population. Seizures a common phenotype can result from diverse...

10.1186/s13040-024-00418-5 article EN cc-by BioData Mining 2025-01-17

Abstract Triple‐negative breast cancer (TNBC) is an uncommon but aggressive subtype of cancer. Obesity has been associated with increased risk and worse prognosis. Some studies suggest that obese patients are less likely to achieve pathologic complete response ( pCR ) neoadjuvant chemotherapy (NCT) experience overall survival. Ki‐67 a proliferation marker correlates tumor aggressiveness. The goal this study was examine the impact weight change during NCT for TNBC on reduction. Retrospective...

10.1002/cam4.388 article EN Cancer Medicine 2015-01-30

Heterozygous, loss-of-function germline variants in ATM have been associated with an increased lifetime risk of breast, pancreas, prostate, stomach, ovarian, colorectal, and melanoma cancers. We conducted a retrospective review thirty-one unrelated patients found to be heterozygous for pathogenic variant identified significant proportion this cohort cancers not currently the hereditary cancer syndrome, including carcinomas gallbladder, uterus, duodenum, kidney, lung as well vascular sarcoma....

10.3389/fonc.2023.1068110 article EN cc-by Frontiers in Oncology 2023-02-14
Matthew J. Moulton Kristhen N Atala Yiming Zheng Debdeep Dutta Dorothy K. Grange and 95 more Wen‐Wen Lin Daniel Wegner Jennifer Wambach Angela L. Duker Michael B. Bober Lisa E. Kratz Carol A. Wise Ila Oxendine Anas M. Khanshour Carlos A. Bacino Ashok Balasubramanyam Lindsay C. Burrage Hsiao-Tuan Chao Iván K. Chinn Gary Clark William J. Craigen Hongzheng Dai Lisa Emrick Shamika Ketkar Seema R. Lalani Brendan Lee Richard A. Lewis Ronit Marom James P. Orengo Jennifer E. Posey Lorraine Potocki Jill A. Rosenfeld Elaine Seto Daryl A. Scott Arjun Tarakad Alyssa A. Tran Tiphanie P. Vogel Monika Weisz Hubshman Kim C. Worley Hugo J. Bellen Michael F. Wangler Shinya Yamamoto Oguz Kanca Christine M. Eng Pengfei Liu Patricia A. Ward Edward M. Behrens Marni J. Falk Kelly Hassey Kosuke Izumi Gonench Kilich Kathleen E. Sullivan Adeline Vanderver Zhe Zhang Anna Raper Vaidehi Jobanputra Mohamad A. Mikati Allyn McConkie‐Rosell Kelly Schoch Vandana Shashi Rebecca C. Spillmann Queenie K.‐G. Tan Sophie Nicole Alan H. Beggs Gerard T. Berry Lauren C. Briere Laurel A. Cobban Matthew Coggins Elizabeth L. Fieg Frances A. High Ingrid A. Holm Susan Korrick Joseph Loscalzo Richard L. Maas Calum A. MacRae J. Carl Pallais Stephen C. Pak Lance H. Rodan Edwin K. Silverman Joan M. Stoler David A. Sweetser Melissa Walker Jessica Douglas Emily Glanton Shilpa N. Kobren Isaac S. Kohane Kimberly LeBlanc Audrey Stephannie Maghiro Rachel Mahoney Alexa T. McCray Amelia L.M. Tan Surendra Dasari Brendan C. Lanpher Ian R. Lanza Éva Morava Devin Oglesbee Güney Bademci Deborah Barbouth Stephanie Bivona Nicholas A. Borja

10.1016/j.gim.2024.101174 article EN Genetics in Medicine 2024-06-03

KIF21A encodes a kinesin motor protein associated with isolated congenital fibrosis of the extraocular muscles (CFEOM), which occurs when autoinhibitory interaction between its and third coiled-coil domains is disrupted. In this study, we describe female child who heterozygous for novel de novo missense variant in p.Leu664Pro, located second domain that was absent her unaffected parents healthy population cohorts. She presented progressive peripheral neuropathy, hypoplasia corpus callosum...

10.1136/jmg-2024-109908 article EN Journal of Medical Genetics 2024-12-06

Abstract Neurodegenerative disorders and leukodystrophies are progressive neurologic conditions that can occur following the disruption of intricately coordinated patterns gene expression. Exome sequencing has been adopted as an effective diagnostic tool for determining underlying genetic etiology Mendelian disorders, however genome offer advantages in its ability to identify characterize copy number, structural, sequence variants noncoding regions. Genome from peripheral leukocytes was...

10.1002/mgg3.1892 article EN Molecular Genetics & Genomic Medicine 2022-03-05

10.1016/j.gimo.2023.100818 article EN cc-by-nc-nd Genetics in Medicine Open 2023-01-01

Raine syndrome (RS) is an autosomal recessive disorder characterized by distinctive facial dysmorphisms and generalized osteosclerosis of periosteal bone causing exophthalmos, choanal atresia or stenosis, intracranial calcifications. The caused biallelic loss-of-function variants in FAM20C located on chromosome 7p22.3. ubiquitously expressed protein kinase. that contains five functional domains including a catalytic domain, binding pocket for FAM20A three distinct N-glycosylation sites. With...

10.1016/j.gimo.2024.101172 article EN cc-by-nc-nd Genetics in Medicine Open 2024-01-01

Undiagnosed diseases present unique clinical management challenges due to their rarity and complexity. Approximately eighty percent of undiagnosed are thought have a genetic etiology. Historically, methods assist in diagnosing individuals included whole exome genome sequencing (WES/WGS). However, these tests been more accessible pediatric patients with diseases. A major barrier for adults seeking WES/WGS includes the cost difficulty receive insurance reimbursement.

10.1016/j.gimo.2024.101018 article EN cc-by-nc-nd Genetics in Medicine Open 2024-01-01

ABSTRACT Rare diseases affect 6%–8% of the population and present diagnostic challenges, particularly for historically marginalized ethnic racial groups. The Undiagnosed Diseases Network (UDN) aims to enhance diagnosis rates research participation among such minoritized A retrospective review was conducted from 2015 2023, analyzing 2235 UDN participants evaluate its progress toward this objective. Data on demographics, disease phenotypes, outcomes, socioeconomic factors were collected...

10.1002/ajmg.a.63904 article EN cc-by-nc American Journal of Medical Genetics Part A 2024-10-14

Abstract Recurrent de novo missense variants in H4 histone genes have recently been associated with a novel neurodevelopmental syndrome that is characterized by intellectual disability and developmental delay as well more variable findings include short stature, microcephaly, facial dysmorphisms. A 4‐year‐old male autism, delay, happy demeanor underwent evaluation through the Undiagnosed Disease Network. He was clinically suspected to Angelman syndrome; however, molecular testing negative....

10.1002/ajmg.a.63193 article EN cc-by-nc-nd American Journal of Medical Genetics Part A 2023-03-29

ATP1A1 encodes a sodium-potassium ATPase that has been linked to several neurological diseases. Using exome and genome sequencing, we identified the heterozygous variant NM_000701.8: c.2707G>A;p.(Gly903Arg) in two unrelated children presenting with delayed motor speech development autism. While absent controls, occurred de novo one proband co-segregated affected half-siblings, mosaicism healthy mother. specific ouabain resistance assay mutant transfected HEK cells, found significantly...

10.1002/acn3.51963 article EN cc-by-nc-nd Annals of Clinical and Translational Neurology 2024-03-19

<div>Abstract<p>The occurrence of multiple primary cancers (MPC) is thought to reflect increased cancer susceptibility in patients due a combination genetic and environmental factors. Here we conducted retrospective review 2,894 consecutive evaluated at single institution identified 31 (1.14%) individuals with history three or more cancers, then analyzed the influences associated their propensity for developing malignancies. We found that 35.5% had hereditary syndrome (HCS), high...

10.1158/1940-6207.c.7213929 preprint EN 2024-05-02
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