Manal Kalkatawi

ORCID: 0000-0002-9820-4129
Publications
Citations
Views
---
Saved
---
About
Contact & Profiles
Research Areas
  • Genomics and Phylogenetic Studies
  • Machine Learning in Bioinformatics
  • RNA and protein synthesis mechanisms
  • Sentiment Analysis and Opinion Mining
  • COVID-19 diagnosis using AI
  • Radiomics and Machine Learning in Medical Imaging
  • Topic Modeling
  • Imbalanced Data Classification Techniques
  • Gene expression and cancer classification
  • RNA Research and Splicing
  • Biomedical Text Mining and Ontologies
  • Advanced Text Analysis Techniques
  • AI in cancer detection
  • Spam and Phishing Detection
  • Financial Distress and Bankruptcy Prediction
  • Microbial Metabolic Engineering and Bioproduction
  • Fractal and DNA sequence analysis
  • Enzyme Production and Characterization
  • Text and Document Classification Technologies
  • Organizational and Employee Performance
  • Genomics and Chromatin Dynamics
  • Lipid metabolism and biosynthesis
  • Misinformation and Its Impacts
  • Technology Adoption and User Behaviour
  • Blockchain Technology Applications and Security

King Abdulaziz University
2018-2024

King Abdullah University of Science and Technology
2011-2018

Bioscience Research
2011

Marshfield Clinic
2011

Fake news has been around for a long time, but the rise of social networking applications over recent years rapidly increased growth fake among individuals. The absence adequate procedures to combat aggravated problem. Consequently, negatively impacts various aspects life (economical, social, and political). Many individuals rely on Twitter as source, especially in Arab region. Mostly, are reading sharing regardless truth behind news. Identifying manually these open platforms would be...

10.3390/app13148209 article EN cc-by Applied Sciences 2023-07-14

Credit card fraud is a significant problem, with millions of dollars lost each year. Detecting fraudulent transactions challenging task due to the large volume data and constantly evolving tactics fraudsters. Likewise any detection it important select relevant features that help distinguishing between non-fraudulent transactions. It also crucial design model effectively captures relationships involved entities such as merchants customers. In this work, prior stage feature engineering carried...

10.1016/j.jksuci.2024.102003 article EN cc-by-nc-nd Journal of King Saud University - Computer and Information Sciences 2024-03-01

BackgroundThe next generation sequencing technologies substantially increased the throughput of microbial genome sequencing. To functionally annotate newly sequenced genomes, a variety experimental and computational methods are used. Integration information from different sources is powerful approach to enhance such annotation. Functional analysis necessary for downstream experiments, crucially depends on this annotation but it hampered by current lack suitable integration exploration...

10.1371/journal.pone.0082210 article EN cc-by PLoS ONE 2013-12-06

Recognition of different genomic signals and regions (GSRs) in DNA is crucial for understanding genome organization, gene regulation, function, which turn generate better annotations. Although many methods have been developed to recognize GSRs, their pure computational identification remains challenging. Moreover, various GSRs usually require a specialized set features developing robust recognition models. Recently, deep-learning (DL) shown more accurate prediction models than 'shallow'...

10.1093/bioinformatics/bty752 article EN cc-by-nc Bioinformatics 2018-08-31

10.1007/s13369-021-05475-0 article EN Arabian Journal for Science and Engineering 2021-05-20

10.1007/s44250-025-00186-x article EN cc-by-nc-nd Discover Health Systems 2025-02-08

Genome annotation is one way of summarizing the existing knowledge about genomic characteristics an organism. There has been increased interest during last several decades in computer-based structural and functional genome annotation. Many methods for this purpose have developed eukaryotes prokaryotes. Our study focuses on comparison annotations prokaryotic genomes. To best our there no fully automated system detailed generated by different (AMs). The presence many AMs development new ones...

10.1186/s12864-015-1826-4 article EN cc-by BMC Genomics 2015-08-17

Abstract The COVID-19 pandemic has spread worldwide for over 2 years now. raises a significant threat to global health due its transmissibility and high pathogenicity. current standard detection method COVID-19, namely, reverse transcription–polymerase chain reaction (RT–PCR), is slow inaccurate help fight the pandemic. RT–PCR takes hours days report single test result false-negative rate. As result, an infected person with negative may unknowingly continue virus. Thus, better methods are...

10.1007/s11042-023-16017-1 article EN cc-by Multimedia Tools and Applications 2023-07-10

Polyadenylation is a critical stage of RNA processing during the formation mature mRNA, and present in most known eukaryote protein-coding transcripts many long non-coding RNAs. The correct identification poly(A) signals (PAS) not only helps to elucidate 3'-end genomic boundaries transcribed DNA region gene regulatory mechanisms but also gives insight into multiple transcript isoforms resulting from alternative PAS. Although progress has been made in-silico prediction signals, recognition...

10.1186/s12864-017-4033-7 article EN cc-by BMC Genomics 2017-08-15

Sentiment analysis became a very motivating area in both academic and industrial fields due to the exponential increase of online published reviews recommendations. To solve problem analysing classifying those recommendations, several techniques have been proposed. Lately, deep neural networks showed promising outcomes sentiment analysis. The growing number Arab users on Internet along with increasing amount Arabic comments encouraged researchers apply learning analyse them. This article is...

10.1177/0165551519865488 article EN Journal of Information Science 2019-09-18

Motivation: Recognition of poly(A) signals in mRNA is relatively straightforward due to the presence easily recognizable polyadenylic acid tail. However, task identifying motifs primary genomic DNA sequence that correspond a far more challenging problem. important for better gene annotation and understanding regulation mechanisms. In this work, we present one such motif prediction method based on properties human surrounding motif. These include thermodynamic, physico-chemical statistical...

10.1093/bioinformatics/btr602 article EN other-oa Bioinformatics 2011-11-15

This paper provides a detailed description of new Twitter-based benchmark dataset for Arabic Sentiment Analysis (ASAD), which is launched in competition3, sponsored by KAUST awarding 10000 USD, 5000 USD and 2000 to the first, second third place winners, respectively. Compared other publicly released datasets, ASAD large, high-quality annotated dataset(including 95K tweets), with three-class sentiment labels (positive, negative neutral). We presents details data collection process annotation...

10.48550/arxiv.2011.00578 preprint EN other-oa arXiv (Cornell University) 2020-01-01

The COVID-19 pandemic has spread worldwide for over two years. It was considered a significant threat to global health due its transmissibility and high pathogenicity. standard test COVID-19, namely, reverse transcription polymerase chain reaction (RT–PCR), is somehow inaccurate might have false-negative rate (FNR). As result, an infected person with negative result may unknowingly continue the virus, especially if they are undiscovered strain. Thus, more accurate diagnostic technique...

10.3390/covid4080077 article EN cc-by COVID 2024-07-24

Recently, business sectors have focused on offering a wide variety of services through utilizing different modern technologies such as super apps in order to fulfill customers’ needs and create satisfactory user experience. Accordingly, studying the experience has become one most popular trends research field due its essential role prosperity continuity. Thus, many researchers dedicated their efforts exploring analyzing across social media, blogs, websites, employing methods machine learning...

10.3390/app14166952 article EN cc-by Applied Sciences 2024-08-08

Abstract Contact: vladimir.bajic@kaust.edu.sa Supplementary information: data are available at Bioinformatics online.

10.1093/bioinformatics/btt161 article EN Bioinformatics 2013-04-15

<b><i>Introduction:</i></b> The novel coronavirus (COVID-19) originated in Wuhan, China, December 2019. To date, the virus has infected more than 110 million people worldwide and claimed 2.5 lives. With rapid increase number of cases, some countries face a shortage testing resources. Computational methods such as deep learning algorithms can help situation to expedite automate diagnosis COVID-19. <b><i>Methods:</i></b> In this research, we...

10.1159/000521658 article EN cc-by-nc Saudi Journal of Health Systems Research 2022-02-01

This paper provides an overview of the Arabic Sentiment Analysis Challenge organized by King Abdullah University Science and Technology (KAUST). The task in this challenge is to develop machine learning models classify a given tweet into one three categories Positive, Negative, or Neutral. From our recently released ASAD dataset, we provide competitors with 55K tweets for training, 20K validation, based on which performance participating teams are ranked leaderboard,...

10.48550/arxiv.2109.14456 preprint EN other-oa arXiv (Cornell University) 2021-01-01

As fraud and cybercrime become more frequent sophisticated, preventing users from being exposed to risk is a significant challenge for the scientific community. Current banking systems use One Time Password (OTP) sent mobile phone prevent user impersonation attacks. However, it could be compromised by man-in-the-middle It also presents usability unavailability problems if SMS service inaccessible, especially when traveling or in case of damaged stolen phone. Using Machine Learning (ML)...

10.1109/aiccsa56895.2022.10017814 article EN 2022-12-01
Coming Soon ...