Naike Ye

ORCID: 0000-0003-0823-6862
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About
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Research Areas
  • Oxidative Organic Chemistry Reactions
  • Computational Drug Discovery Methods
  • Metal-Catalyzed Oxygenation Mechanisms
  • Pharmacological Receptor Mechanisms and Effects
  • Porphyrin and Phthalocyanine Chemistry
  • Biochemical and biochemical processes
  • Phytochemicals and Antioxidant Activities
  • Crystallography and molecular interactions
  • Synthesis and biological activity
  • Protein Structure and Dynamics
  • Food Chemistry and Fat Analysis
  • Crystal structures of chemical compounds
  • Fluorine in Organic Chemistry
  • Alkaloids: synthesis and pharmacology
  • Plant biochemistry and biosynthesis

Massachusetts Institute of Technology
2021-2025

Vassar College
2020-2021

Abstract Nitriles are uncommon in nature and typically constructed from oximes through the oxidative decarboxylation of amino acid substrates or derivatization carboxylic acids. Here we report a third nitrile biosynthesis strategy featuring cyanobacterial synthase AetD. During eagle-killing neurotoxin, aetokthonotoxin, AetD transforms 2-aminopropionate portion 5,7-dibromo- l -tryptophan to nitrile. Employing combination structural, biochemical biophysical techniques, characterized as...

10.1038/s41557-024-01603-z article EN cc-by Nature Chemistry 2024-09-16

The plasmanylethanolamine desaturase enzyme (EC 1.14.99.19) is an integral membrane protein responsible for the catalytic conversion of alkyl ether phosphatidylethanolamines (AEPEs) to vinyl phosphatidylethanolamine (VEPEs)1-3. VEPEs, collectively known as plasmalogens, are glycerophospholipids characterized by a bond at glycerol sn-1 position1,3. Localized in mammalian brain, heart, and white blood cells, well most subcellular membranes, these plasmalogens critical signaling factors against...

10.1063/4.0000642 article EN cc-by Structural Dynamics 2025-03-01

The novel coronavirus SARS-CoV-2 Main Protease (Mpro) is an internally encoded enzyme that hydrolyzes the translated polyproteins at designated sites. protease directly mediates viral replication processes; hence, a promising target for drug design. Plant-based natural products, especially polyphenols and phenolic compounds, provide scaffold many effective antiviral medications, have recently been shown to be able inhibit Mpro of SARS-CoV-2. Specifically, polyphenolic compounds found in...

10.3390/biophysica1040028 article EN cc-by Biophysica 2021-09-24

Nitriles are uncommon in nature and typically constructed from oximes via the oxidative decarboxylation of amino acid substrates or derivatization carboxylic acids. Here we report a third strategy nitrile biosynthesis featuring cyanobacterial synthase AetD. During 'eagle-killing' neurotoxin, aetokthonotoxin, AetD converts alanyl side chain 5,7-dibromo-L-tryptophan to nitrile. Employing combination structural, biochemical, biophysical techniques, characterized as non-heme diiron enzyme that...

10.1101/2023.08.03.551874 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-08-03

The title compound [systematic name: 5-(trifluoromethyl)pyridine-2-carboxylic acid monohydrate], C 7 H 4 F 3 NO 2 ·H O, is the hydrate of a pyridine with carboxylic group and trifluoromethyl substituent situated para to one another on aromatic ring. molecule forms centrosymmetric water-bridged hydrogen-bonding dimer graph-set notation R (12). Hydrogen-bonding distances 2.5219 (11) 2.8213 Å are observed between donor bridging water acceptor, carbonyl oxygen respectively. dimers further linked...

10.1107/s2056989020013523 article EN cc-by Acta Crystallographica Section E Crystallographic Communications 2020-10-16
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