Mehmet Girgin

ORCID: 0000-0003-1768-4421
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About
Contact & Profiles
Research Areas
  • Pluripotent Stem Cells Research
  • 3D Printing in Biomedical Research
  • Tissue Engineering and Regenerative Medicine
  • Developmental Biology and Gene Regulation
  • Nerve injury and regeneration
  • Planarian Biology and Electrostimulation
  • Cancer Cells and Metastasis
  • Cellular Mechanics and Interactions
  • Congenital heart defects research
  • MicroRNA in disease regulation
  • Music Education and Analysis
  • Cultural and Sociopolitical Studies
  • Nanofabrication and Lithography Techniques
  • Turkish Urban and Social Issues
  • Education Practices and Challenges
  • Diverse Music Education Insights
  • Islamic Thought and Society Studies
  • Molecular Biology Techniques and Applications
  • Lexicography and Language Studies
  • Turkish Literature and Culture
  • Neuroscience and Neural Engineering
  • Innovative Microfluidic and Catalytic Techniques Innovation
  • Single-cell and spatial transcriptomics
  • Nuclear Receptors and Signaling

Roche (Switzerland)
2023

École Polytechnique Fédérale de Lausanne
2016-2021

University of Basel
2021

Institute of Cellular and Organismic Biology, Academia Sinica
2019

Bioengineering Center
2019

Institute of Environmental Studies & Wetland Management
2019

Three-dimensional organoid constructs serve as increasingly widespread in vitro models for development and disease modeling. Current approaches to recreate morphogenetic processes rely on poorly controllable ill-defined matrices, thereby largely overlooking the contribution of biochemical biophysical extracellular matrix (ECM) factors promoting multicellular growth reorganization. Here, we show how defined synthetic matrices can be used explore role ECM complex 3D neuroepithelial cysts that...

10.1073/pnas.1603529113 article EN Proceedings of the National Academy of Sciences 2016-10-14

When stimulated with a pulse from an exogenous WNT pathway activator, small aggregates of mouse embryonic stem cells (ESCs) can undergo embryo-like axial morphogenesis and patterning along the three major body axes. However, these structures, called gastruloids, currently lack anterior regions, such as those belonging to brain. Here, we describe approach generate gastruloids that have more complete antero-posterior development. We used hydrogel microwell arrays promote robust derivation ESCs...

10.1016/j.stemcr.2021.03.017 article EN cc-by-nc-nd Stem Cell Reports 2021-04-22

The difficulty of studying post-implantation development in mammals has sparked a flurry activity to develop vitro models, termed embryoids, based on self-organizing pluripotent stem cells. Previous approaches derive embryoids either lack the physiological morphology and signaling interactions, or are unconducive model post-gastrulation development. Here, we report bioengineering-inspired approach aimed at addressing this gap. We employ high-throughput cell aggregation simultaneously coax...

10.1038/s41467-021-25237-8 article EN cc-by Nature Communications 2021-08-26

Abstract Organoids are powerful models for studying tissue development, physiology, and disease. However, current culture systems disrupt the inductive tissue-tissue interactions needed complex morphogenetic processes of native organogenesis. Here we show that mouse embryonic stem cells (mESCs) can be coaxed to robustly undergo fundamental steps early heart organogenesis with an in vivo -like spatiotemporal fidelity. These axially patterned organoids support generation cardiovascular...

10.1101/802181 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2019-10-14

Abstract When stimulated with a pulse from an exogenous WNT pathway activator, small aggregates of mouse embryonic stem cells (ESCs) can undergo embryo-like axial morphogenesis and patterning along the three major body axes. However, these structures, called gastruloids, currently lack anterior regions, such as those belonging to brain. Here we describe approach generate gastruloids that have more complete antero-posterior development. We used bioengineered hydrogel microwell arrays promote...

10.1101/2020.10.10.334326 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2020-10-10

Embryonic development is a complex process integrating cell fate decisions and morphogenesis in spatiotemporally controlled manner. Previous studies with model organisms laid the foundation of our knowledge on post-implantation development; however, studying mammalian embryos at this stage difficult laborious process. Early attempts to recapitulate vitro begun embryoid bodies (EBs), which aggregates mouse embryonic stem cells (mESCs) were shown differentiate into spatially arranged germ...

10.21769/bioprotoc.4722 article EN cc-by-nc BIO-PROTOCOL 2023-01-01

Methods for screening combinations of signals their effects on stem cell behavior are needed in the field tissue engineering. We introduce a microgel-based platform testing proteins fate.

10.1039/c8bm01180j article EN Biomaterials Science 2019-01-01

Abstract Establishment of the three body axes is a critical step during animal development. In mammals, genetic studies have shown that combination precisely deployed signals from extraembryonic tissues position anteroposterior axis (AP) within embryo and lead to emergence dorsoventral (DV) left-right (LR) axes. We used Gastruloids , embryonic organoids, as model system understand this process find they are able develop AP, DV LR well undergo axial elongation in manner mirror embryos. The...

10.1101/104539 preprint EN cc-by bioRxiv (Cold Spring Harbor Laboratory) 2017-01-31

Human mammary epithelial cells can proliferate and reorganize into polarized multi-cellular constructs in-vitro, thereby functioning as an important model system in recapitulating key steps of in-vivo morphogenesis. Current approaches to constructing such three-dimensional mimics the microenvironment have involved use complex ill-defined naturally derived matrices, whose properties are difficult manipulate independently, which therefore limited our ability understand extrinsic regulation...

10.1038/s41598-020-78432-w article EN cc-by Scientific Reports 2020-12-10

The difficulty of studying post-implantation development in mammals has sparked a flurry activity to develop vitro models, termed embryoids, based on self-organizing pluripotent stem cells. Previous approaches derive embryoids either lack the physiological morphology and signaling interactions, or are not yet optimal for modeling post-gastrulation development. Here, we report bioengineering-inspired approach aimed at addressing this gap. A high-throughput cell aggregation was employed...

10.1101/2021.01.10.426096 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2021-01-10

Standard protocol used for immunostaining Gastruloids (aggregates of mouse embryonic stem cells) in the Lutolf Lab, EPFL. For a published on how to generate Gastruloids, see:

10.17504/protocols.io.7tzhnp6 preprint EN 2019-10-01

Gastruloid generation protocol as performed in the Lutolf Lab, EPFL. For previously published protocols, see: Baillie-Johnson, Peter, et al. "Generation of aggregates mouse embryonic stem cells that show symmetry breaking, polarization and emergent collective behaviour vitro."JoVE (Journal Visualized Experiments)105 (2015): e53252. Mehmet, G., "Generating Gastruloids from Mouse Embryonic Stem Cells."Protocol Exchange (2018).

10.17504/protocols.io.9j5h4q6 preprint EN 2019-11-20

Standard protocol used for culturing mouse embryonic stem cells (mESCs) in the Lutolf Lab, EPFL.

10.17504/protocols.io.7xbhpin preprint EN 2019-10-03
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