Erik Ziegler

ORCID: 0000-0003-1857-8129
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About
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Research Areas
  • Radiomics and Machine Learning in Medical Imaging
  • Functional Brain Connectivity Studies
  • Scientific Computing and Data Management
  • Medical Imaging Techniques and Applications
  • Advanced MRI Techniques and Applications
  • Advanced Neuroimaging Techniques and Applications
  • Neural dynamics and brain function
  • AI in cancer detection
  • Traumatic Brain Injury Research
  • Lung Cancer Diagnosis and Treatment
  • Parkinson's Disease Mechanisms and Treatments
  • Multimedia Communication and Technology
  • Coastal and Marine Management
  • Cell Image Analysis Techniques
  • Neurological disorders and treatments
  • Digital Radiography and Breast Imaging
  • Botulinum Toxin and Related Neurological Disorders
  • Pleural and Pulmonary Diseases
  • Social Media in Health Education
  • Advanced Biosensing Techniques and Applications
  • EEG and Brain-Computer Interfaces
  • Ultrasound in Clinical Applications
  • Software System Performance and Reliability
  • Sleep and Wakefulness Research
  • Osteomyelitis and Bone Disorders Research

University of Lübeck
2024

Massachusetts General Hospital
2022

Photon Imaging (United States)
2022

University of Pittsburgh Medical Center
2020

Centre Hospitalier Universitaire de Liège
2017

University of Liège
2011-2016

Centre hospitalier régional de la Citadelle
2016

Cyclotron (Netherlands)
2011-2013

University of Gothenburg
2010

Abstract The National Cancer Institute (NCI) Research Data Commons (CRDC) aims to establish a national cloud-based data science infrastructure. Imaging (IDC) is new component of CRDC supported by the Moonshot. goal IDC enable broad spectrum cancer researchers, with and without imaging expertise, easily access explore value deidentified support integrated analyses nonimaging data. We achieve this colocating versatile collections computing resources exploration, visualization, analysis tools....

10.1158/0008-5472.can-21-0950 article EN cc-by-nc-nd Cancer Research 2021-06-15

During non-rapid eye movement (NREM) sleep, a global decrease in synaptic strength associated with slow waves (SWs) would enhance signal-to-noise ratio of neural responses during subsequent wakefulness. To test this prediction, 32 human volunteers were trained to coarse orientation discrimination task, either the morning or evening. They retested after 8 h wakefulness respectively. Performance was enhanced only night absence any change abundance NREM SWs but proportion number "initiated"...

10.1523/jneurosci.0763-12.2013 article EN cc-by-nc-sa Journal of Neuroscience 2013-02-20

PURPOSE Zero-footprint Web architecture enables imaging applications to be deployed on premise or in the cloud without requiring installation of custom software user’s computer. Benefits include decreased costs and information technology support requirements, as well improved accessibility across sites. The Open Health Imaging Foundation (OHIF) Viewer is an extensible platform developed leverage these benefits address demand for open-source Web-based applications. can modified site-specific...

10.1200/cci.19.00131 article EN cc-by JCO Clinical Cancer Informatics 2020-04-23

In Parkinson's disease (PD) the demonstration of neuropathological disturbances in nigrostriatal and extranigral brain pathways using magnetic resonance imaging remains a challenge. Here, we applied novel diffusion-weighted approach-track density (TDI). Twenty-seven non-demented patients (mean duration: 5 years, mean score on Hoehn & Yahr scale=1.5) were compared with 26 elderly controls matched for age, sex, education level. Track images created by sampling each subject's spatially...

10.1016/j.neuroimage.2014.06.033 article EN cc-by-nc-nd NeuroImage 2014-06-20

Abstract A vast body of literature exists showing functional and structural dysfunction within the brains patients with disorders consciousness. However, function (fluorodeoxyglucose FDG‐PET metabolism)–structure (MRI‐diffusion‐weighted images; DWI) relationship how it is affected in severely brain injured remains ill‐defined. MRI‐DWI 25 (19 Disorders Consciousness which 7 unresponsive wakefulness syndrome, 12 minimally conscious; 6 emergence from conscious state) healthy control subjects...

10.1002/hbm.23269 article EN Human Brain Mapping 2016-06-06

To reduce head movement during resting state functional magnetic resonance imaging, post-coma patients with disorders of consciousness (DOC) are frequently sedated propofol. However, little is known about the effects this sedation on brain connectivity patterns in damaged essential for differential diagnosis. In study, we aimed to assess these effects.Using imaging 3T data obtained over several years scanning diagnostic and research purposes, employed a seed-based approach examine...

10.1213/ane.0000000000001721 article EN Anesthesia & Analgesia 2016-12-10

Accurate assessment of lymph node size in 3D CT scans is crucial for cancer staging, therapeutic management, and monitoring treatment response. Existing state-of-the-art segmentation frameworks medical imaging often rely on fully annotated datasets. However, segmentation, these datasets are typically small due to the extensive time expertise required annotate numerous nodes scans. Weakly-supervised learning, which leverages incomplete or noisy annotations, has recently gained interest...

10.59275/j.melba.2025-d482 article EN The Journal of Machine Learning for Biomedical Imaging 2025-01-29

Abstract Oncology clinical trials have become increasingly dependent upon image-based surrogate endpoints for determining patient eligibility and treatment efficacy. As therapeutics evolved multiplied in number, the tumor metrics criteria used to characterize therapeutic response progressively more varied complex. The growing intricacies of evaluation, together with rising expectations rapid consistent results reporting, make it difficult site radiologists adequately address local...

10.1158/0008-5472.can-17-0334 article EN Cancer Research 2017-10-31

Purpose: XNAT is an informatics software platform to support imaging research, particularly in the context of large, multicentre studies type that are essential validate quantitative biomarkers. provides import, archiving, processing and secure distribution facilities for image related study data. Until recently, however, modern data visualisation annotation tools were lacking on platform. We describe background to, implementation of, integration Open Health Imaging Foundation (OHIF) Viewer...

10.3390/tomography8010040 article EN cc-by Tomography 2022-02-11

Objective: To assess the effectiveness of soft splints on spasticity and hand opening in chronic patients with upper limb disorders consciousness (vegetative state/unresponsive wakefulness syndrome-VS/UWS minimally conscious state-MCS).Methods: In this prospective single-blind controlled trial, a blind evaluator assessed (Modified Ashworth Scale Modified Tardieu Scale), range motion (ROM) at metacarpophalangeal, wrist elbow joints patients' before after splinting, manual stretching control...

10.3109/02699052.2015.1005132 article EN Brain Injury 2015-04-27

Abstract Introduction Independent component analysis ( ICA ) has been extensively used for reducing task‐free BOLD fMRI recordings into spatial maps and their associated time‐courses. The spatially identified independent components can be considered as intrinsic connectivity networks ICN s) of non‐contiguous regions. To date, the patterns have analyzed with techniques developed volumetric data. Objective Here, we detail a graph building technique that allows these ICNs to theory. Methods...

10.1002/brb3.626 article EN cc-by Brain and Behavior 2017-02-16

Brain-derived neurotrophic factor (BDNF) modulates the pruning of synaptically silent axonal arbors. The Met allele BDNF gene is associated with a reduction in neurotrophin's activity-dependent release. We used diffusion-weighted imaging to construct structural brain networks for 36 healthy subjects known genotypes. Through permutation testing we discovered clear differences connection strength between carrying and those homozygotic Val allele. trained Gaussian process classifier capable...

10.1371/journal.pone.0069290 article EN cc-by PLoS ONE 2013-07-31

Detecting signs of consciousness in patients a vegetative state/unresponsive wakefulness syndrome (UWS/VS) or minimally conscious state (MCS) is known to be very challenging. Plotkin et al. (2010) recently showed the possibility using breathing-controlled communication device with locked syndrome. We here aim test breathing-based "sniff controller" that could used as an alternative diagnostic tool evaluate response command severely brain damaged chronic disorders (DOC).Twenty-five DOC were...

10.3389/fnhum.2014.01020 article EN cc-by Frontiers in Human Neuroscience 2014-12-23
Oscar Estéban Christopher J. Markiewicz Hans J. Johnson Erik Ziegler Alexandre Manhães-Savio and 95 more Dorota Jarecka Christopher Burns David Gage Ellis Carlo Hamalainen Michael Notter Benjamin Yvernault Taylor Salo Michael Waskom Mathias Goncalves Kesshi Jordan Jason H. Wong Blake E Dewey Cindee Madison Erin Benderoff Daniel J. Clark Fred Loney Dav Clark Anisha Keshavan Michael Joseph Dylan M. Nielson Michael Dayan Marc Modat Alexandre Gramfort Salma Bougacha Basile Pinsard Shoshana Berleant Horea Christian Ariel Rokem Matteo Visconti di Oleggio Castello Yaroslav O. Halchenko Jakub Kaczmarzyk Gaël Varoquaux Rastko Ćirić Brendan Moloney Elizabeth DuPré Serge Koudoro Michael G. Clark Ben Cipollini Demián Wassermann Jérémy Guillon Ross D. Markello Michael Hanke Colin R. Buchanan Rosalia Tungaraza Ashley Gillman Wolfgang M. Pauli Gilles de Hollander Sharad Sikka Jessica Forbes David Mordom Shariq Iqbal Matteo Flavio Mancini Ian B. Malone Mathieu Dubois Yannick Schwartz Caroline Frohlich Alejandro Tabas David Welch Adam Richie-Halford Steven Tilley Aimi Watanabe B. Nolan Nichols Julia M. Huntenburg Arman Eshaghi Daniel Ginsburg Alexander Schaefer Katherine L. Bottenhorn Chad Cumba Benjamin Acland Anibal Sólon Heinsfeld Erik Kastman James D. Kent Jens Kleesiek Ali Ghayoor Drew Erickson Steven Giavasis Alejandro de la Vega Franz Liem René Küttner Martin Felipe Perez-Guevara John A. Lee Jarrod Millman Jeff Lai Dale Zhou Christian Haselgrove Daniel Glen Anna Doll Mandy Renfro Carlos Gabriel Piffaretti Correa Siqi Liu Leonie Lampe Xiangzhen Kong Michael Hallquist Sin Kim Ari E. Kahn

10.5281/zenodo.3668316 article PL 2020-02-14
Oscar Estéban Christopher J. Markiewicz Christopher Burns Mathias Goncalves Dorota Jarecka and 95 more Erik Ziegler Shoshana Berleant David Gage Ellis Basile Pinsard Cindee Madison Michael Waskom Michael Notter Daniel J. Clark Alexandre Manhães-Savio Dav Clark Kesshi Jordan Michael Dayan Yaroslav O. Halchenko Fred Loney Taylor Salo Blake E Dewey Hans J. Johnson Salma Bougacha Anisha Keshavan Benjamin Yvernault Carlo Hamalainen Horea Christian Rastko Ćirić Mathieu Dubois Michael Joseph Ben Cipollini Steven Tilley Matteo Visconti di Oleggio Castello Jason H. Wong Alejandro de la Vega Jakub Kaczmarzyk Julia M. Huntenburg Michael G. Clark Erin Benderoff Drew Erickson James D. Kent Michael Hanke Steven Giavasis Brendan Moloney B. Nolan Nichols Rosalia Tungaraza Caroline Frohlich Demián Wassermann Gilles de Hollander Arman Eshaghi Jarrod Millman Matteo Flavio Mancini Dylan M. Nielson Gaël Varoquaux Aimi Watanabe David Mordom Jérémy Guillon Serge Koudoro Andrey Chetverikov Ariel Rokem Benjamin Acland Jessica Forbes Ross D. Markello Ashley Gillman Xiangzhen Kong Daniel Geisler Salvatore John Alexandre Gramfort Anna Doll Colin R. Buchanan Elizabeth DuPré Siqi Liu Alexander Schaefer Jens Kleesiek Sharad Sikka Yannick Schwartz John A. Lee Aaron Mattfeld Adam Richie-Halford Franz Liem Martin Felipe Perez-Guevara Anibal Sólon Heinsfeld Christian Haselgrove Joke Durnez Leonie Lampe Russell A. Poldrack Tristan Glatard Alejandro Tabas Chad Cumba Fernando Pérez‐García Ross Blair Shariq Iqbal David Welch William Triplett Ali Ghayoor R. Cameron Craddock Carlos Gabriel Piffaretti Correa Dimitri Papadopoulos Orfanos Jörg Stadler Joshua Warner

10.5281/zenodo.4035081 article PL 2020-09-17

Artificial Intelligence (AI) is increasingly becoming a tool to enhance various medical image analysis tasks with accuracies comparable expert clinicians. Computer assisted detection and diagnosis, segmentation registration have significantly benefited from AI. However, integration of AI into the clinical workflow has been slow due requirements for libraries that are specific each model, also environments centers. These challenges demonstrate need an AI-based solution can be integrated any...

10.1117/12.2513004 article EN 2019-03-08

Event Abstract Back to A finite-element reciprocity solution for EEG forward modeling with realistic individual head models Erik Ziegler1*, Sarah L. Chellappa1, Giulia Gaggioni1, Julien Q. Ly1, Gilles Vandewalle1, Elodie André1, Christophe Geuzaine2 and Phillips1, 2 1 University of Liege, Cyclotron Research Centre, Belgium Liège, Department Electrical Engineering Computer Science, We present a finite element modelling (FEM) implementation solving the problem in electroencephalography (EEG)....

10.3389/conf.fnhum.2014.214.00072 article EN cc-by Frontiers in Human Neuroscience 2014-01-01
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