Yelyzaveta Berezovska

ORCID: 0000-0003-2164-0640
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About
Contact & Profiles
Research Areas
  • Lipid Membrane Structure and Behavior
  • RNA and protein synthesis mechanisms
  • RNA modifications and cancer
  • Spectroscopy and Quantum Chemical Studies
  • RNA Research and Splicing
  • Advanced Thermodynamics and Statistical Mechanics
  • Protein Structure and Dynamics

Université de Montpellier
2025

Centre National de la Recherche Scientifique
2023-2025

Institut Charles Sadron
2023-2025

Centre de Biologie Structurale
2025

Inserm
2025

Université de Strasbourg
2023

Lipid membranes have complex compositions, and modeling the thermodynamic properties of multi-component lipid systems remains a remote goal. In this work, we attempt to describe thermodynamics binary mixtures by mapping coarse-grained molecular dynamics two-dimensional simple fluid mixtures. By computing analyzing density fluctuations model bilayer, determine numerical value quadratic coupling term appearing in regular solutions for...

10.1063/5.0242522 article EN The Journal of Chemical Physics 2025-02-12

Biomolecular condensates are currently recognized to play a key role in organizing cellular space and orchestrating biochemical processes. Despite an increasing interest characterizing their internal organization at the molecular scale, not much is known about how densely crowded environment within these affects structural properties of recruited macromolecules. Here, we adopted explicit-solvent all-atom simulations based on combination enhanced sampling approaches investigate conformational...

10.1073/pnas.2425261122 article EN cc-by-nc-nd Proceedings of the National Academy of Sciences 2025-04-09

Biomolecular condensates are currently recognized to play a key role in organizing cellular space and orchestrating biochemical processes. Despite an increasing interest characterizing their internal organization at the molecular scale, not much is known about how densely crowded environment within these affects structural properties of recruited macromolecules. Here we adopted explicit-solvent all-atom simulations based on combination enhanced sampling approaches investigate conformational...

10.1101/2024.09.13.612876 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2024-09-19

Lipid membranes have complex compositions and modeling the thermodynamic properties of multi-component lipid systems remains a remote goal. In this work we attempt to describe thermodynamics binary mixtures by mapping coarse-grained molecular dynamics two-dimensional simple fluid mixtures. By computing analysing density fluctuations model bilayer determine numerical value quadratic coupling term appearing in regular solutions for DPPC-DLiPC pair lipids at three different compositions. Our...

10.48550/arxiv.2408.14403 preprint EN arXiv (Cornell University) 2024-08-26

Abstract A fundamental result in the theory of Brownian motion is Einstein-Sutherland relation between mobility and diffusion constant. Any classical linear response transport coefficient obeys a similar Einstein-Helfand relation. We show this work how to derive interleaflet friction lipid bilayer by means an adequate generalisation Einstein Special attention must be paid practical cases constraints on system center mass position that enforced when coupling thermostat.

10.1088/2399-6528/acb313 article EN cc-by Journal of Physics Communications 2023-01-01

A fundamental result in the theory of Brownian motion is Einstein-Sutherland relation between mobility and diffusion constant. Any classical linear response transport coefficient obeys a similar Einstein-Helfand relation. We show this work how to derive interleaflet friction lipid bilayer by means an adequate generalisation Einstein Special attention must be paid practical cases constraints on system center mass position that enforced when coupling thermostat.

10.48550/arxiv.2204.07809 preprint EN cc-by arXiv (Cornell University) 2022-01-01
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