Arja Ray

ORCID: 0000-0003-2305-2324
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About
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Research Areas
  • CAR-T cell therapy research
  • Monoclonal and Polyclonal Antibodies Research
  • Viral Infectious Diseases and Gene Expression in Insects
  • Immune cells in cancer
  • 3D Printing in Biomedical Research
  • Immune Cell Function and Interaction
  • Cancer Cells and Metastasis
  • COVID-19 Clinical Research Studies
  • Cellular Mechanics and Interactions
  • Immunotherapy and Immune Responses
  • SARS-CoV-2 and COVID-19 Research
  • Pancreatic and Hepatic Oncology Research
  • Nanofabrication and Lithography Techniques
  • Long-Term Effects of COVID-19
  • Cancer Immunotherapy and Biomarkers
  • Immune responses and vaccinations
  • Enhanced Oil Recovery Techniques
  • Microbial bioremediation and biosurfactants
  • T-cell and B-cell Immunology
  • Collagen: Extraction and Characterization
  • Petroleum Processing and Analysis
  • Wound Healing and Treatments
  • Single-cell and spatial transcriptomics
  • COVID-19 Impact on Reproduction
  • Cell Image Analysis Techniques

University of California, San Francisco
2020-2024

University of Minnesota
2017-2021

Physical Sciences (United States)
2018-2021

Minneapolis Institute of Arts
2018

Indian Institute of Technology Kharagpur
2009

Abstract Directed migration by contact guidance is a poorly understood yet vital phenomenon, particularly for carcinoma cell invasion on aligned collagen fibres. We demonstrate that single cells, architectures providing cues induce constrained focal adhesion maturation and associated F-actin alignment, consequently orchestrating anisotropic traction stresses drive orientation directional migration. Consistent with this understanding, relaxing spatial constraints to either through reduction...

10.1038/ncomms14923 article EN cc-by Nature Communications 2017-04-12

Although infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has pleiotropic and systemic effects in some individuals1-3, many others experience milder symptoms. Here, to gain a more comprehensive understanding of the distinction between mild phenotypes pathology disease 2019 (COVID-19) its origins, we performed whole-blood-preserving single-cell analysis protocol integrate contributions from all major immune cell types blood-including neutrophils, monocytes,...

10.1038/s41586-021-03234-7 article EN other-oa Nature 2021-01-25

Pancreatic ductal adenocarcinoma (PDA) is an extremely metastatic and lethal disease. Here, in both murine human PDA, we demonstrate that extracellular matrix architecture regulates cell extrusion subsequent invasion from intact structures through tumor-associated collagen signatures (TACS). This results early dissemination histologically premalignant lesions continual well-differentiated disease, it suggests TACS as a biomarker to aid the pathologic assessment of Furthermore, show...

10.1172/jci.insight.150330 article EN cc-by JCI Insight 2021-12-16

We present a novel platform to quantify spatiotemporal dynamics of cell behavior at and beyond the invasive front demonstrate that contact inhibition guidance orchestrate cancer invasion into anisotropic extracellular matrix.

10.1039/c7ib00152e article EN Integrative Biology 2018-01-01

CD206 is a common marker of putative immunosuppressive “M2” state in tumor-associated macrophages (TAMs). We made novel conditional (Mrc1) knock-in mouse to specifically visualize and/or deplete CD206+ TAMs. Early depletion and monocytes (Mono/Macs) led the indirect loss conventional type I dendritic cells (cDC1), CD8 T cells, NK tumors. TAMs robustly expressed CXCL9, contrasting with stress-responsive Spp1-expressing immature monocytes, which became prominent early depletion. differentially...

10.1084/jem.20240957 article EN The Journal of Experimental Medicine 2024-11-27
Jason A. Hackney Haridha Shivram Jason A. Vander Heiden Christopher C. Overall Luz D. Orozco and 95 more Xia Gao Eugene S. Kim Nathaniel R. West Aditi Qamra Diana Chang Arindam Chakrabarti David F. Choy Alexis J. Combes Tristan Courau Gabriela K. Fragiadakis Arjun A. Rao Arja Ray Jessica Tsui Kenneth H. Hu Nicholas F. Kuhn Matthew F. Krummel David J. Erle Kirsten N. Kangelaris Aartik Sarma Zoe M. Lyon Carolyn S. Calfee Prescott G. Woodruff Rajani Ghale Eran Mick Ashley Byrne Beth Shoshana Zha Charles Langelier Carolyn M. Hendrickson Monique G.P. van der Wijst George C. Hartoularos Tianna Grant Raymund Bueno David S. Lee John R. Greenland Yang Sun Richard K. Perez Anton Ogorodnikov Alyssa Ward Chun Ye Yumiko Abe‐Jones Michael Adkisson K. Mark Ansel Saurabh Asthana Alexander J. Beagle Sharvari Bhide Cathy Cai Saharai Caldera Lorena Espinar Sidney Carrillo Suzanna Chak Stephanie A. Christenson Zachary Collins Spyros Darmanis Angela M. Detweiler Catherine DeVoe Walter L. Eckalbar Jeremy Giberson Ana Gonzalez Gracie Gordon Paula Hayakawa Serpa Alejandra Jáuregui Chayse Jones Serena Ke Divya Kushnoor Tasha Lea Deanna Lee Aleksandra Leligdowicz Yale Liu Salman Mahboob Lenka Maliskova Michael A. Matthay Elizabeth W. McCarthy Priscila Muñoz-Sandoval Norma Neff Nguyễn Hoàng Việt Nishita Nigam Randy Parada Maíra Phelps Logan Pierce Priya A. Prasad Sadeed Rashid Gabriella C. Reeder Nicklaus Rodriguez Bushra Samad Andrew Schroeder Cole Shaw Alan Shen Austin Sigman Pratik Sinha Matthew H. Spitzer Sara Sunshine Kevin Tang Luz Torres Altamirano Alexandra Tsitsiklis Erden Tumurbaatar

Altered myeloid inflammation and lymphopenia are hallmarks of severe infections. We identified the upregulated EN-RAGE gene program in airway blood cells from patients with acute lung injury SARS-CoV-2 or other causes across 7 cohorts. This was associated greater clinical severity predicted future mechanical ventilation death.

10.1016/j.isci.2023.107813 article EN cc-by-nc-nd iScience 2023-09-01

Bispecific T-cell engager (BiTE) molecules are biologic T cell-directing immunotherapies. Blinatumomab is approved for treatment of B-cell malignancies, but BiTE molecule development in solid tumors has been more challenging. Here, we employed intravital imaging to characterize exposure and pharmacodynamic response an anti-muCD3/anti-huEGFRvIII mouse surrogate EGFR variant III (EGFRvIII)-positive breast implanted within immunocompetent mice. Our study revealed heterogeneous temporal spatial...

10.1158/2326-6066.cir-21-0594 article EN Cancer Immunology Research 2022-04-12

Abstract The anti-tumor function of CD8 T cells is limited through well-established pathways cell exhaustion (T EX ). Strategies to capture emergent functional states amongst this dominant trajectory dysfunction are necessary find durable immunity. By leveraging transcriptional reporting (by the fluorescent protein TFP) activation marker Cd69, related upstream AP-1 transcription factors, we define a classifier for potent versus sub-optimal CD69+ arising from stimulation. In tumors,...

10.1101/2023.09.26.559470 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-09-28

Abstract Cell migration is strongly influenced by the organization of surrounding 3‐D extracellular matrix. In particular, within fibrous solid tumors, carcinoma cell invasion may be directed patterns aligned collagen in extra‐epithelial space. Thus, studying interactions heterogeneous populations cancer cells that include stem/progenitor‐like stem subpopulation and networks critical to our understanding dissemination. Here, we describe a robust method generate matrices vitro mimic vivo...

10.1002/cpsc.57 article EN Current Protocols in Stem Cell Biology 2018-05-24

Tumor-associated macrophages (TAMs) are frequently categorized as being 'M1' or 'M2' polarized, even substantial data challenges this binary modeling of macrophage cell state. One molecule consistently referenced a delineator putative immunosuppressive state is the surface protein CD206. We thus made novel conditional CD206 (Mrc1) knock-in mouse to specifically visualize and/or deplete CD206+ 'M2-like' TAMs and assess their correspondence with pro-tumoral immunity. Early, but not late...

10.1101/2023.10.31.560822 preprint EN cc-by-nc-nd bioRxiv (Cold Spring Harbor Laboratory) 2023-11-02

Abstract While SARS-CoV-2 infection has pleiotropic and systemic effects in some patients, many others experience milder symptoms. We sought a holistic understanding of the severe/mild distinction COVID-19 pathology, its origins. performed wholeblood preserving single-cell analysis protocol to integrate contributions from all major cell types including neutrophils, monocytes, platelets, lymphocytes contents serum. Patients with mild disease display coordinated pattern interferonstimulated...

10.21203/rs.3.rs-97042/v1 preprint EN cc-by Research Square (Research Square) 2020-10-28

Abstract Pancreatic ductal adenocarcinoma (PDA) is an extremely metastatic and lethal disease. Here in both murine human PDA we demonstrate that extracellular matrix architecture regulates cell extrusion subsequent invasion from intact structures through Tumor-Associated Collagen Signatures (TACS), resulting early dissemination histologically pre-malignant lesions continual well-differentiated Furthermore, show pancreatitis results invasion-conducive architectures, thus priming the stroma...

10.1101/2021.02.19.431984 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2021-02-19

Summary T cell exhaustion is a major impediment to anti-tumor immunity. However, it remains elusive how other immune cells in the tumor microenvironment (TME) contribute this dysfunctional state. Here we show that biology of tumor-associated macrophages (TAM) and exhausted (T ex ) TME extensively linked. We demonstrate vivo depletion TAM reduces programs tumor-infiltrating CD8 + reinvigorates their effector potential. Reciprocally, transcriptional epigenetic profiling reveals express factors...

10.1101/2021.09.27.461866 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2021-09-28

<h3>Background</h3> The idea that tumors co-opt elements of tissue repair and maintenance for growth immune evasion is a long-held one.<sup>1</sup> Cancer associated fibroblasts or CAFs can control the localization polarization state infiltrating cells, therefore they represent an enticing target clinical modulation.<sup>2–4</sup> Through mechanisms including ECM modulation, cytokine secretion even antigen presentation<sup>5</sup>, these relatively rare but powerful cells have potential to...

10.1136/jitc-2024-sitc2024.0876 article EN cc-by-nc Regular and Young Investigator Award Abstracts 2024-11-01

Abstract While SARS-CoV-2 infection has pleiotropic and systemic effects in some patients, many others experience milder symptoms. We sought a holistic understanding of the severe/mild distinction COVID-19 pathology, its origins. performed whole-blood preserving single-cell analysis protocol to integrate contributions from all major cell types including neutrophils, monocytes, platelets, lymphocytes contents serum. Patients with mild disease display coordinated pattern interferon-stimulated...

10.1101/2020.10.28.359935 preprint EN bioRxiv (Cold Spring Harbor Laboratory) 2020-10-29

Supplementary Data from Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy

10.1158/2326-6066.22544616 preprint EN cc-by 2023-04-04

Supplementary Data from Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy

10.1158/2326-6066.22544613 preprint EN cc-by 2023-04-04

Supplementary Data from Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy

10.1158/2326-6066.22544619 preprint EN cc-by 2023-04-04

&lt;div&gt;Abstract&lt;p&gt;Bispecific T-cell engager (BiTE) molecules are biologic T cell–directing immunotherapies. Blinatumomab is approved for treatment of B-cell malignancies, but BiTE molecule development in solid tumors has been more challenging. Here, we employed intravital imaging to characterize exposure and pharmacodynamic response an anti-muCD3/anti-huEGFRvIII mouse surrogate EGFR variant III (EGFRvIII)-positive breast implanted within immunocompetent mice. Our study revealed...

10.1158/2326-6066.c.6550704.v1 preprint EN 2023-04-04

Supplementary Data from Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy

10.1158/2326-6066.22544625 preprint EN 2023-04-04
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