Daniel D. Johnson

ORCID: 0000-0003-3119-5560
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About
Contact & Profiles
Research Areas
  • Marine and fisheries research
  • Fish Ecology and Management Studies
  • Coral and Marine Ecosystems Studies
  • Crustacean biology and ecology
  • Music and Audio Processing
  • Fish Biology and Ecology Studies
  • Topic Modeling
  • Marine Bivalve and Aquaculture Studies
  • Advanced Graph Neural Networks
  • Musculoskeletal pain and rehabilitation
  • Marine animal studies overview
  • Natural Language Processing Techniques
  • Neuroscience and Music Perception
  • Music Technology and Sound Studies
  • Toxic Organic Pollutants Impact
  • Atmospheric chemistry and aerosols
  • Bayesian Modeling and Causal Inference
  • Explainable Artificial Intelligence (XAI)
  • Per- and polyfluoroalkyl substances research
  • Machine Learning and Algorithms
  • Logic, programming, and type systems
  • Generative Adversarial Networks and Image Synthesis
  • Marine Biology and Ecology Research
  • Magnetic Field Sensors Techniques
  • Ichthyology and Marine Biology

New South Wales Department of Primary Industries
2014-2024

Dr.Techn.Olav Olsen (Norway)
2024

Government of the United States of America
2024

Brigham Young University
2014-2024

Naval Medical Center Portsmouth
2020-2024

Duke University
2024

Sydney Institute of Marine Science
2017-2022

Google (United States)
2020-2021

Google (Canada)
2021

University of Michigan
2005-2018

Denoising diffusion probabilistic models (DDPMs) (Ho et al. 2020) have shown impressive results on image and waveform generation in continuous state spaces. Here, we introduce Discrete Diffusion Probabilistic Models (D3PMs), diffusion-like generative for discrete data that generalize the multinomial model of Hoogeboom 2021, by going beyond corruption processes with uniform transition probabilities. This includes matrices mimic Gaussian kernels space, based nearest neighbors embedding...

10.48550/arxiv.2107.03006 preprint EN cc-by-nc-sa arXiv (Cornell University) 2021-01-01

Language models exhibit complex, diverse behaviors when prompted with free-form text, making it difficult to characterize the space of possible outputs. We study problem behavior elicitation, where goal is search for prompts that induce specific target (e.g., hallucinations or harmful responses) from a language model. To navigate exponentially large prompts, we train investigator map randomly-chosen distribution outputs elicit them, similar amortized Bayesian inference. do this through...

10.48550/arxiv.2502.01236 preprint EN arXiv (Cornell University) 2025-02-03

We present a novel programming language design that attempts to combine the clarity and safety of high-level functional languages with efficiency parallelism low-level numerical languages. treat arrays as eagerly-memoized functions on typed index sets, allowing abstract function manipulations, such currying, work arrays. In contrast composing primitive bulk-array operations, we argue for an explicit nested indexing style mirrors application arguments. also introduce fine-grained effects...

10.1145/3473593 article EN Proceedings of the ACM on Programming Languages 2021-08-19

This paper presents a novel approach for fitting length data to the Schnute growth model. Cohorts were fitted manually time series of distributions from two stocks (Clarence and Hunter Rivers) Metapenaeus macleayi considered analogous individuals tag–recapture data, in order estimate parameters. Data Clarence males best three-parameter Model (L∞ = 21.3 mm CL, κ 0.025 day–1 γ –1.35), whereas those two-parameter version model 33.5 0.009 0 fixed). The equivalent von Bertalanffy function was fit...

10.1071/mf10060 article EN Marine and Freshwater Research 2010-01-01

Effective fisheries management of mobile species relies on robust knowledge animal behaviour and habitat-use. Indices can be useful for interpreting catch-per-unit-effort data which acts as a proxy relative abundance. Information about habitat-use inform stocking release strategies or the design marine protected areas. The Giant Mud Crab (Scylla serrata; Family: Portunidae) is swimming estuarine crab that supports significant harvest throughout Indo-West Pacific, but little known fine-scale...

10.1186/s40462-023-00384-3 article EN cc-by Movement Ecology 2023-04-17

Portunus pelagicus (blue swimmer crab) is widely distributed and fished throughout the indo-west Pacific, but little known of its biology ecology in southeast Australia. In this study, reproductive P. inhabiting Wallis Lake, a large coastal lake that supports largest regional commercial fishery for species was investigated. Males females with mature gonads occur fishing season (November to July), however, ovigerous are most prevalent November December. The mean size at which 50% reached...

10.1651/08-3076.1 article EN Journal of Crustacean Biology 2010-04-01

Abstract Portunid crabs are an iconic, high value species in NSW, but catches highly variable space and time. Substantial variation biomass is observed both exploited unfished populations, environmental effects on distribution abundance important factor contributing to this variability. Predicting responding variability a challenge for management sustainability of populations. We examine spatial temporal Blue Swimmer Crab ( Portunus armatus ) over 2.5 year trapping survey two temperate...

10.1007/s12237-024-01347-6 article EN cc-by Estuaries and Coasts 2024-03-13

Abstract In response to experimental evidence and anecdotal concern about bycatch in the net‐covered traps used increasingly by recreational commercial fishers target giant mud crabs Scylla serrata New South Wales, Australia, experiments were done examine utility of escape gaps reducing Yellowfin Bream Acanthopagrus australis (also known as Surf Bream) undersized crabs. each two rivers, 10 different treatments comprising four sizes rectangular, horizontal (85 × 45 mm, 85 55 95 mm) a control...

10.1080/02755947.2012.760502 article EN North American Journal of Fisheries Management 2013-03-06

Abstract Spawning is a key life history event for aquatic species that can be triggered by environmental signals. For estuarine-dependent species, the timing of such triggers important determining future patterns in recruitment. Here, we used acoustic telemetry to identify potential drivers spawning migration female Giant Mud Crabs ( Scylla serrata ). Eighty-nine mature crabs were tagged two subtropical south-east Australian estuaries, Clarence River (~ 29.4°S) and Kalang 30.5°S), during...

10.1007/s12237-022-01061-1 article EN cc-by Estuaries and Coasts 2022-03-01

Abstract Larval dispersal and connectivity have important implications for fisheries management, especially species with life cycles influenced by ocean boundary currents. Giant Mud Crab ( Scylla serrata ) Blue Swimmer Portunus armatus are two estuarine portunid crabs (Family: Portunidae) that support significant commercial recreational harvest in eastern Australia. migrate to coastal waters spawn, while spawn primarily within estuaries they occasionally followed larval the East Australian...

10.1111/fog.12608 article EN cc-by-nc Fisheries Oceanography 2022-09-07

Two replicate multi-mesh gill and trammel nets, each comprising five 30 m long panels made from different-sized mesh (38, 54, 70, 90 100 mm stretched openings) were fished in a south-east Australian barrier estuary over seven nights to evaluate their potential as sampling gears for fishery-independent surveys of estuarine fish assemblages. There no differences composition structure assemblages, mean abundance, or diversity catches between the two types net. The differed sizes, with 38 54...

10.1071/mf05056 article EN Marine and Freshwater Research 2005-01-01
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