Manashi Das

ORCID: 0000-0003-4057-8096
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About
Contact & Profiles
Research Areas
  • Plant-Microbe Interactions and Immunity
  • Plant tissue culture and regeneration
  • Agricultural Development and Management
  • Soil Carbon and Nitrogen Dynamics
  • Machine Learning in Bioinformatics
  • Microbial Community Ecology and Physiology
  • Gut microbiota and health
  • Artificial Immune Systems Applications
  • Genomics and Phylogenetic Studies
  • Fractal and DNA sequence analysis

Institute of Advanced Study in Science and Technology
2019-2024

Cotton University
2024

Manchester Metropolitan University
2024

Instituto de Estudos Avançados da Universidade de São Paulo
2024

Seeds of plants are a confirmation their next generation and come associated with unique microbia community. Vertical transmission this microbiota signifies the importance these organisms for healthy seedling thus healthier both symbionts. Seed endophytic bacterial community composition is guided by plant genotype many environmental factors. In north-east India, within narrow geographical region, several indigenous rice genotypes cultivated across broad agroecosystems having standing water...

10.1186/s12864-019-6334-5 article EN cc-by BMC Genomics 2019-12-01

Abstract A larger amount of sequence data in private and public databases produced by next-generation sequencing put new challenges due to limitation associated with the alignment-based method for comparison. So, there is a high need faster analysis algorithms. In this study, we developed an alignment-free algorithm analysis. The novelty our approach inclusion fuzzy integral Markov chain model. estimate parameters considering frequencies occurrence all possible nucleotide pairs from each DNA...

10.1038/s41598-019-40452-6 article EN cc-by Scientific Reports 2019-03-06

Shifting agricultural soil ecosystem represents stress of varying degrees depending upon the length fallow cycle. In this study, we try to assess synergistic effect microbial diversity on different rhizospheric niches (loosely adhered and strongly rhizosphere soil, bulk crop root interior) cycles (5, 8, 20 years) using culture-dependent independent approaches along with their metabolic profiling. Culture dependent study shows higher bacterial in followed by loosely (F = 156, p < 0.001)...

10.22541/au.170664651.13204273/v1 preprint EN Authorea (Authorea) 2024-01-30
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