Jacob Heilmann‐Clausen

ORCID: 0000-0003-4713-6004
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About
Contact & Profiles
Research Areas
  • Mycorrhizal Fungi and Plant Interactions
  • Forest Ecology and Biodiversity Studies
  • Lichen and fungal ecology
  • Plant Pathogens and Fungal Diseases
  • Ecology and Vegetation Dynamics Studies
  • Plant and animal studies
  • Forest Management and Policy
  • Species Distribution and Climate Change
  • Botany and Plant Ecology Studies
  • Fungal Biology and Applications
  • Forest Insect Ecology and Management
  • Peatlands and Wetlands Ecology
  • Wildlife-Road Interactions and Conservation
  • Environmental DNA in Biodiversity Studies
  • Plant and fungal interactions
  • Smart Agriculture and AI
  • Forest ecology and management
  • Yeasts and Rust Fungi Studies
  • Wildlife Ecology and Conservation
  • Bryophyte Studies and Records
  • Cell Image Analysis Techniques
  • Slime Mold and Myxomycetes Research
  • Genomics and Phylogenetic Studies
  • Animal Ecology and Behavior Studies
  • Animal and Plant Science Education

University of Copenhagen
2016-2025

Natural History Museum Aarhus
2013-2022

Global Biodiversity Information Facility
2021

Natural History Museum of Denmark
2016-2019

Bavarian Forest National Park
2018

National Central University
2018

Naturalis Biodiversity Center
2018

Uppsala University
2018

Swedish University of Agricultural Sciences
2014

University of Helsinki
2014

Abstract Aim To understand how the integration of contextual spatial data on land cover and human infrastructure can help reduce bias in sampling effort, improve utilization citizen science‐based species recording schemes. By comparing four different science projects, we explore design's complexity affects role these biases. Location Denmark, Europe. Methods We used a point process model to estimate effect intensity observations from then use results predict areas under‐ oversampling as well...

10.1111/ddi.12477 article EN other-oa Diversity and Distributions 2016-08-21
Caio Graco‐Roza Sonja Aarnio Nerea Abrego Alicia Teresa Rosario Acosta Janne Alahuhta and 87 more Jan Altman Claudia Angiolini Jukka Aroviita Fabio Attorre Lars Baastrup‐Spohr José Juan Barrera-Alba Jonathan Belmaker Idoia Biurrun Gianmaria Bonari Helge Bruelheide Sabina Burrascano Marta Carboni Pedro Cardoso José C. Carvalho Giuseppe Castaldelli Morten Christensen Gilsineia Corrêa Iwona Dembicz Jürgen Dengler Jiří Doležal Patrícia Domingos Tibor Erős Carlos E. L. Ferreira Goffredo Filibeck Sergio R. Floeter Alan M. Friedlander Johanna Gammal Anna Gavioli Martin M. Goßner Itai Granot Riccardo Guarino Camilla Gustafsson Brian Hayden Siwen He Jacob Heilmann‐Clausen Jani Heino John T. Hunter Vera L. M. Huszar Monika Janišová Jenny Jyrkänkallio‐Mikkola Kimmo K. Kahilainen Julia Kemppinen Łukasz Kozub Carla Kruk Michel Kulbiki Анна Куземко Peter C. le Roux Aleksi Lehikoinen Domênica Teixeira de Lima Ángel López‐Urrutia B. Lukács Miska Luoto Stefano Mammola Marcelo Manzi Marinho Luciana da Silva Menezes Marco Milardi Marcela Miranda Gleyci Aparecida Oliveira Moser Joerg Mueller Pekka Niittynen Alf Norkko Arkadiusz Nowak Jean Pierre Ometto Otso Ovaskainen Gerhard E. Overbeck F. Pacheco Virpi Pajunen Salza Palpurina Félix Picazo Juan Antonio Campos Iván F. Rodil Francesco Sabatini Shira Salingré Michele De Sanctis Ángel M. Segura Lúcia Helena Sampaio da Silva Z. D. Stevanović Grzegorz Swacha Anette Teittinen Kimmo Tolonen Ioannis Tsiripidis Leena Virta Beixin Wang Jianjun Wang Wolfgang W. Weisser Yuan Xu Janne Soininen

Understanding the variation in community composition and species abundances (i.e., β-diversity) is at heart of ecology. A common approach to examine β-diversity evaluate directional by measuring decay similarity among pairs communities along spatial or environmental distance. We provide first global synthesis taxonomic functional distance analysing 148 datasets comprising different types organisms environments.

10.1111/geb.13513 article EN cc-by Global Ecology and Biogeography 2022-05-12
Leho Tedersoo Vladimir Mikryukov Alexander Zizka Mohammad Bahram Niloufar Hagh‐Doust and 95 more Sten Anslan Oleh Prylutskyi Manuel Delgado‐Baquerizo Fernando T. Maestre Jaan Pärn Maarja Öpik Mari Moora Martin Zobel Mikk Espenberg Ülo Mander Abdul Nasir Khalid Adriana Corrales Ahto Agan Aída‐M. Vasco‐Palacios Alessandro Saitta Andrea C. Rinaldi Annemieke Verbeken Bobby P. Sulistyo Boris Tamgnoue Brendan Furneaux Camila Duarte Ritter Casper Nyamukondiwa C. Sharp César Marín Daniyal Gohar Dārta Kļaviņa Dipon Sharmah Dong Dai Eduardo Nouhra Elisabeth M. Biersma Elisabeth Rähn Erin K. Cameron Eske De Crop Eveli Otsing Evgeny A. Давыдов Felipe E. Albornoz Francis Q. Brearley Franz Buegger Geoffrey Zahn Gregory Bonito Inga Hiiesalu Isabel C. Barrio Jacob Heilmann‐Clausen Jelena Ankuda John Y. Kupagme Jose G. Maciá‐Vicente Joseph Djeugap Fovo József Geml Juha M. Alatalo Julieta Alvarez‐Manjarrez Kadri Põldmaa Kadri Runnel Kalev Adamson Kari Anne Bråthen Karin Pritsch Kassim I. Tchan Kęstutis Armolaitis Kevin D. Hyde Kevin K. Newsham Kristel Panksep Adebola Azeez Lateef Liis Tiirmann Linda Hansson Louis J. Lamit Malka Saba Maria Tuomi Marieka Gryzenhout Marijn Bauters Meike Piepenbring Nalin N. Wijayawardene Nourou S. Yorou Olavi Kurina Peter E. Mortimer Peter Meidl Petr Kohout R. Henrik Nilsson Rasmus Puusepp Rein Drenkhan Roberto Garibay‐Orijel Roberto Godoy Saad Alkahtani Saleh Rahimlou Sergey V. Dudov Sergei Põlme Soumya Ghosh Sunil Mundra Talaat Ahmed Tarquin Netherway Terry W. Henkel Tomas Roslin Vincent Nteziryayo Vladimir E. Fedosov V. G. Onipchenko W. A. Erandi Yasanthika Young Woon Lim

Fungi are highly diverse organisms, which provide multiple ecosystem services. However, compared with charismatic animals and plants, the distribution patterns conservation needs of fungi have been little explored. Here, we examined endemicity patterns, global change vulnerability priority areas for functional groups soil based on six surveys using a high-resolution, long-read metabarcoding approach. We found that all most peaks in tropical habitats, including Amazonia, Yucatan, West-Central...

10.1111/gcb.16398 article EN cc-by Global Change Biology 2022-08-19
Leho Tedersoo Vladimir Mikryukov Sten Anslan Mohammad Bahram Abdul Nasir Khalid and 90 more Adriana Corrales Ahto Agan Aída M. Vasco‐Palacios Alessandro Saitta Alexandre Antonelli Andrea C. Rinaldi Annemieke Verbeken Bobby P. Sulistyo Boris Tamgnoue Brendan Furneaux Camila Duarte Ritter Casper Nyamukondiwa C. Sharp César Marín Dong-Qin Dai Daniyal Gohar Dipon Sharmah Elisabeth M. Biersma Erin K. Cameron Eske De Crop Eveli Otsing Evgeny A. Давыдов Felipe E. Albornoz Francis Q. Brearley Franz Buegger Genevieve Gates Geoffrey Zahn Gregory Bonito Indrek Hiiesalu Inga Hiiesalu Irma Zettur Isabel C. Barrio Jaan Pärn Jacob Heilmann‐Clausen Jelena Ankuda John Y. Kupagme Joosep Sarapuu Jose G. Maciá‐Vicente Joseph Djeugap Fovo József Geml Juha M. Alatalo Julieta Alvarez‐Manjarrez Jutamart Monkai Kadri Põldmaa Kadri Runnel Kalev Adamson Kari Anne Bråthen Karin Pritsch Kassim I. Tchan Kęstutis Armolaitis Kevin D. Hyde Kevin K. Newsham Kristel Panksep Lateef A. Adebola Louis J. Lamit Malka Saba Marcela Eugenia da Silva Cáceres Maria Tuomi Marieka Gryzenhout Marijn Bauters Miklós Bálint Nalin N. Wijayawardene Niloufar Hagh‐Doust Nourou S. Yorou Olavi Kurina Peter E. Mortimer Peter Meidl R. Henrik Nilsson Rasmus Puusepp Rebeca Casique-Valdés Rein Drenkhan Roberto Garibay‐Orijel Roberto Godoy Saleh Alfarraj Saleh Rahimlou Sergei Põlme Sergey V. Dudov Sunil Mundra Talaat Ahmed Tarquin Netherway Terry W. Henkel Tomas Roslin Vladimir E. Fedosov В. Г. Онипченко W. A. Erandi Yasanthika Young Woon Lim Meike Piepenbring Dārta Kļaviņa Urmas Kõljalg Kessy Abarenkov

10.1007/s13225-021-00493-7 article EN Fungal Diversity 2021-11-01
Vladimir Mikryukov Olesya Dulya Alexander Zizka Mohammad Bahram Niloufar Hagh‐Doust and 95 more Sten Anslan Oleh Prylutskyi Manuel Delgado‐Baquerizo Fernando T. Maestre R. Henrik Nilsson Jaan Pärn Maarja Öpik Mari Moora Martin Zobel Mikk Espenberg Ülo Mander Abdul Nasir Khalid Adriana Corrales Ahto Agan Aída M. Vasco‐Palacios Alessandro Saitta Andrea C. Rinaldi Annemieke Verbeken Bobby P. Sulistyo Boris Tamgnoue Brendan Furneaux Camila Duarte Ritter Casper Nyamukondiwa C. Sharp César Marín Daniyal Gohar Dārta Kļaviņa Dipon Sharmah Dong-Qin Dai Eduardo Nouhra Elisabeth M. Biersma Elisabeth Rähn Erin K. Cameron Eske De Crop Eveli Otsing Evgeny A. Давыдов Felipe E. Albornoz Francis Q. Brearley Franz Buegger Geoffrey Zahn Gregory Bonito Inga Hiiesalu Isabel C. Barrio Jacob Heilmann‐Clausen Jelena Ankuda Jiří Doležal John Y. Kupagme Jose G. Maciá‐Vicente Joseph Djeugap Fovo József Geml Juha M. Alatalo Julieta Alvarez‐Manjarrez Kadri Põldmaa Kadri Runnel Kalev Adamson Kari Anne Bråthen Karin Pritsch Kassim Tchan Issifou Kęstutis Armolaitis Kevin D. Hyde Kevin K. Newsham Kristel Panksep Adebola Azeez Lateef Linda Hansson Louis J. Lamit Malka Saba Maria Tuomi Marieka Gryzenhout Marijn Bauters Meike Piepenbring Nalin N. Wijayawardene Nourou S. Yorou Olavi Kurina Peter E. Mortimer Peter Meidl Petr Kohout Rasmus Puusepp Rein Drenkhan Roberto Garibay‐Orijel Roberto Godoy Saad Alkahtani Saleh Rahimlou Sergey V. Dudov Sergei Põlme Soumya Ghosh Sunil Mundra Talaat Ahmed Tarquin Netherway Terry W. Henkel Tomas Roslin Vincent Nteziryayo Vladimir E. Fedosov В. Г. Онипченко W. A. Erandi Yasanthika Young Woon Lim

How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering management this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate distributions drivers different levels taxonomic phylogenetic fungi their ecological groups. We show impact precipitation temperature interactions on local species richness (alpha diversity)...

10.1126/sciadv.adj8016 article EN cc-by-nc Science Advances 2023-11-29

Fungal conservation is gaining momentum globally, but many challenges remain. To advance further, more data are needed on fungal diversity across space and time. Fundamental information regarding population sizes, trends, geographic ranges also critical to accurately assess the extinction risk of individual species. However, obtaining these particularly difficult for fungi due their immense diversity, complex problematic taxonomy, cryptic nature. This paper explores how citizen science (CS)...

10.1111/conl.13013 article EN cc-by Conservation Letters 2024-03-22

10.1016/j.foreco.2004.07.010 article EN Forest Ecology and Management 2004-08-25

10.1023/a:1022825809503 article EN Biodiversity and Conservation 2003-01-01

Abstract Aim Fungi are drivers of wood decay in forested ecosystem, while bryophytes use dead as a platform for their autotrophic lifestyle. We tested the hypothesis that fungal communities on beech logs mainly structured by substrate quality, bryophyte climatic gradients. In addition, we whether community structure both organism groups is altered along gradient from nearly pristine forest to forests heavily affected management and human disturbance past. Location Europe. Methods surveyed...

10.1111/jbi.12388 article EN Journal of Biogeography 2014-08-19

Abstract Sexual spores are important for the dispersal and population dynamics of fungi. They show remarkable morphological diversity, but underlying forces driving spore evolution poorly known. We investigated whether trophic status substrate associations associated with morphology in 787 macrofungal genera. that both size ornamentation specialization, so large ornamented more probable ectomycorrhizal than saprotrophic This suggests facilitates attachment to arthropod vectors, which species...

10.1038/s41598-018-23292-8 article EN cc-by Scientific Reports 2018-03-29

The article presents an AI-based fungi species recognition system for a citizen-science community. system's real-time identification too - FungiVision with mobile application front-end, led to increased public interest in fungi, quadrupling the number of citizens collecting data. FungiVision, deployed human-in-the-loop, reaches nearly 93% accuracy. Using collected data, we developed novel fine-grained classification dataset Danish Fungi 2020 (DF20) several unique characteristics:...

10.3390/s22020633 article EN cc-by Sensors 2022-01-14
Sabina Burrascano Francesco Chianucci Giovanni Trentanovi Sebastian Kepfer‐Rojas Tommaso Sitzia and 95 more Flóra Tinya Inken Doerfler Yoan Paillet Thomas A. Nagel Božena Mitić Lourdes Morillas Silvana Munzi T. van der Sluis Edoardo Alterio Lorenzo Balducci Rafael Barreto de Andrade Christophe Bouget Paolo Giordani Thibault Lachat Dinka Matošević Francesca Napoleone Juri Nascimbene Chiara Paniccia Nicolas Roth Réka Aszalós Gediminas Brazaitis Andrea Cutini Ettore D’Andrea Pallieter De Smedt Jacob Heilmann‐Clausen Philippe Janssen Daniel Kozák Anders Mårell Martin Mikoláš Björn Nordén Radim Matula Peter Schall Miroslav Svoboda Mariana Ujházyová Kris Vandekerkhove Michael Wohlwend Fotios Xystrakis Michele Aleffi Christian Ammer Frédéric Archaux Thomas Asbeck Dimitrios Ν. Avtzis Manfred Ayasse Simonetta Bagella Rosario Balestrieri Anna Barbati Marco Basile Ariel Bergamini Giada Bertini Alessandro Biscaccianti Steffen Boch János Bölöni Pierluigi Bombi Yves Boscardin Giorgio Brunialti Hans Henrik Bruun François Buscot David Bille Byriel Thomas Campagnaro Alessandro Campanaro Matthieu Chauvat Michał Ciach Marek Čiliak Luca Cistrone João M. Cordeiro Pereira Rolf Daniel Bruno De Cinti Gabriele de Filippo Wouter Dekoninck Umberto Di Salvatore Yann Dumas Zoltán Elek Fabrizio Ferretti Dimitrios Fotakis Tamás Frank Julian Frey Carmen Giancola Erika Gömöryová Marion Gosselin Frédéric Gosselin Martin M. Goßner Frank Götmark Elena Haeler Aslak Kappel Hansen Lionel R. Hertzog Jeňýk Hofmeister Jan Hošek Vivian Kvist Johannsen Mathias Just Justensen Nathalie Korboulewsky Bence Kovács Ferenc Lakatos Carlos Miguel Landivar Luc Lens Emanuele Lingua

The European biodiversity and forest strategies rely on sustainable management (SFM) to conserve biodiversity. However, current sustainability assessments hardly account for direct indicators. We focused multi-taxon to: i) gather map the existing information; ii) identify knowledge research gaps; iii) discuss its potential. established a network fit data species, standing trees, lying deadwood sampling unit description from 34 local datasets across 3591 units. A total of 8724 species were...

10.1016/j.biocon.2023.110176 article EN cc-by-nc-nd Biological Conservation 2023-06-30
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